Analysis of interatomic Contacts of Structural Units in PDB entry:
2CVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CVQ entry

There are 2 chains in PDB entry 2CVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ILE 332
B
 MET 0ILE 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2CVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
45 58Right-handed alpha
Helix 4
4
A
72 77Right-handed alpha
Helix 5
5
A
96 119Right-handed alpha
Helix 6
6
A
131 142Right-handed alpha
Helix 7
7
A
147 149Right-handed 310
Helix 8
8
A
155 171Right-handed alpha
Helix 9
9
A
173 175Right-handed 310
Helix 10
10
A
209 211Right-handed 310
Helix 11
11
A
214 221Right-handed alpha
Helix 12
12
A
221 238Right-handed alpha
Helix 13
13
A
241 258Right-handed alpha
Helix 14
14
A
274 279Right-handed 310
Helix 15
15
A
305 329Right-handed alpha
Helix 16
16
B
13 25Right-handed alpha
Helix 17
17
B
42 44Right-handed 310
Helix 18
18
B
45 58Right-handed alpha
Helix 19
19
B
72 77Right-handed alpha
Helix 20
20
B
96 119Right-handed alpha
Helix 21
21
B
131 142Right-handed alpha
Helix 22
22
B
147 149Right-handed 310
Helix 23
23
B
155 171Right-handed alpha
Helix 24
24
B
173 175Right-handed 310
Helix 25
25
B
209 211Right-handed 310
Helix 26
26
B
214 221Right-handed alpha
Helix 27
27
B
221 238Right-handed alpha
Helix 28
28
B
241 259Right-handed alpha
Helix 29
29
B
274 279Right-handed 310
Helix 30
30
B
305 329Right-handed alpha
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There are 8 sheets in PDB entry 2CVQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
35 40parallel
Strand 3
A
4 8parallel
Strand 4
A
82 85parallel
Strand 5
A
124 127parallel
Strand 6
A
151 153parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
198 199anti-parallel
Strand 3
A
206 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
191 193anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 271first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
295 298anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
35 40parallel
Strand 3
B
4 8parallel
Strand 4
B
82 85parallel
Strand 5
B
124 127parallel
Strand 6
B
151 153parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
198 199anti-parallel
Strand 3
B
206 207anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
191 193anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 271first strand
Strand 2
B
284 292anti-parallel
Strand 3
B
295 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il