Analysis of interatomic Contacts of Structural Units in PDB entry:
2CVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CVZ entry

There are 4 chains in PDB entry 2CVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ARG 289
B
 GLU 2ARG 289
C
 MSE 1ARG 289
D
 GLU 2ARG 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 2CVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 22Right-handed alpha
Helix 2
2
A
33 44Right-handed alpha
Helix 3
3
A
49 56Right-handed 310
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
118 126Right-handed alpha
Helix 7
7
A
135 143Right-handed alpha
Helix 8
8
A
144 146Right-handed 310
Helix 9
9
A
159 189Right-handed alpha
Helix 10
10
A
192 201Right-handed alpha
Helix 11
11
A
207 213Right-handed alpha
Helix 12
12
A
213 218Right-handed alpha
Helix 13
13
A
228 244Right-handed alpha
Helix 14
14
A
250 268Right-handed alpha
Helix 15
15
A
272 275Right-handed 310
Helix 16
16
A
276 285Right-handed alpha
Helix 17
17
B
12 22Right-handed alpha
Helix 18
18
B
33 44Right-handed alpha
Helix 19
19
B
49 56Right-handed 310
Helix 20
20
B
65 77Right-handed alpha
Helix 21
21
B
93 106Right-handed alpha
Helix 22
22
B
118 126Right-handed alpha
Helix 23
23
B
135 143Right-handed alpha
Helix 24
24
B
144 146Right-handed 310
Helix 25
25
B
159 189Right-handed alpha
Helix 26
26
B
192 201Right-handed alpha
Helix 27
27
B
207 213Right-handed alpha
Helix 28
28
B
213 218Right-handed alpha
Helix 29
29
B
228 244Right-handed alpha
Helix 30
30
B
250 268Right-handed alpha
Helix 31
31
B
272 275Right-handed 310
Helix 32
32
B
276 285Right-handed alpha
Helix 33
33
C
12 24Right-handed alpha
Helix 34
34
C
33 44Right-handed alpha
Helix 35
35
C
49 56Right-handed 310
Helix 36
36
C
65 77Right-handed alpha
Helix 37
37
C
78 80Right-handed 310
Helix 38
38
C
93 106Right-handed alpha
Helix 39
39
C
118 126Right-handed alpha
Helix 40
40
C
135 143Right-handed alpha
Helix 41
41
C
144 146Right-handed 310
Helix 42
42
C
159 189Right-handed alpha
Helix 43
43
C
192 201Right-handed alpha
Helix 44
44
C
207 213Right-handed alpha
Helix 45
45
C
213 218Right-handed alpha
Helix 46
46
C
228 244Right-handed alpha
Helix 47
47
C
250 268Right-handed alpha
Helix 48
48
C
272 274Right-handed 310
Helix 49
49
C
275 285Right-handed alpha
Helix 50
50
D
12 24Right-handed alpha
Helix 51
51
D
32 44Right-handed alpha
Helix 52
52
D
49 56Right-handed 310
Helix 53
53
D
65 77Right-handed alpha
Helix 54
54
D
93 106Right-handed alpha
Helix 55
55
D
118 126Right-handed alpha
Helix 56
56
D
135 143Right-handed alpha
Helix 57
57
D
144 146Right-handed 310
Helix 58
58
D
159 189Right-handed alpha
Helix 59
59
D
192 201Right-handed alpha
Helix 60
60
D
207 213Right-handed alpha
Helix 61
61
D
213 218Right-handed alpha
Helix 62
62
D
228 244Right-handed alpha
Helix 63
63
D
250 268Right-handed alpha
Helix 64
64
D
272 275Right-handed 310
Helix 65
65
D
276 285Right-handed alpha
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There are 8 sheets in PDB entry 2CVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
26 29parallel
Strand 3
A
4 7parallel
Strand 4
A
58 61parallel
Strand 5
A
84 88parallel
Strand 6
A
109 113parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
128 133anti-parallel
Strand 3
A
149 156parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
26 29parallel
Strand 3
B
4 7parallel
Strand 4
B
58 61parallel
Strand 5
B
84 88parallel
Strand 6
B
109 113parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
149 156parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
26 29parallel
Strand 3
C
4 7parallel
Strand 4
C
58 61parallel
Strand 5
C
85 88parallel
Strand 6
C
110 113parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
128 133anti-parallel
Strand 3
C
149 156parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
26 29parallel
Strand 3
D
4 7parallel
Strand 4
D
58 61parallel
Strand 5
D
84 88parallel
Strand 6
D
109 113parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 117first strand
Strand 2
D
128 133anti-parallel
Strand 3
D
149 156parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il