Analysis of interatomic Contacts of Structural Units in PDB entry:
2CXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CXP entry

There are 2 chains in PDB entry 2CXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 557
B
 MET 1LEU 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 2CXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
7 21Right-handed alpha
Helix 3
3
A
22 24Right-handed 310
Helix 4
4
A
25 33Right-handed alpha
Helix 5
5
A
35 40Right-handed alpha
Helix 6
6
A
61 75Right-handed alpha
Helix 7
7
A
76 86Right-handed alpha
Helix 8
8
A
99 104Right-handed alpha
Helix 9
9
A
118 138Right-handed alpha
Helix 10
10
A
157 160Right-handed 310
Helix 11
11
A
161 171Right-handed alpha
Helix 12
12
A
172 175Right-handed 310
Helix 13
13
A
188 197Right-handed alpha
Helix 14
14
A
215 234Right-handed alpha
Helix 15
15
A
235 241Right-handed 310
Helix 16
16
A
249 257Right-handed alpha
Helix 17
17
A
259 261Right-handed 310
Helix 18
18
A
271 275Right-handed 310
Helix 19
19
A
278 280Right-handed 310
Helix 20
20
A
281 289Right-handed alpha
Helix 21
21
A
289 310Right-handed alpha
Helix 22
22
A
311 314Right-handed 310
Helix 23
23
A
315 330Right-handed alpha
Helix 24
24
A
347 361Right-handed alpha
Helix 25
25
A
385 390Right-handed 310
Helix 26
26
A
391 398Right-handed alpha
Helix 27
27
A
416 418Right-handed 310
Helix 28
28
A
419 439Right-handed alpha
Helix 29
29
A
441 453Right-handed alpha
Helix 30
30
A
455 463Right-handed alpha
Helix 31
31
A
464 467Right-handed 310
Helix 32
32
A
483 506Right-handed alpha
Helix 33
33
A
512 519Right-handed alpha
Helix 34
34
A
525 530Right-handed alpha
Helix 35
35
A
539 553Right-handed alpha
Helix 36
36
B
7 21Right-handed alpha
Helix 37
37
B
22 24Right-handed 310
Helix 38
38
B
25 33Right-handed alpha
Helix 39
39
B
35 40Right-handed alpha
Helix 40
40
B
61 75Right-handed alpha
Helix 41
41
B
76 86Right-handed alpha
Helix 42
42
B
99 104Right-handed alpha
Helix 43
43
B
118 138Right-handed alpha
Helix 44
44
B
157 160Right-handed 310
Helix 45
45
B
161 171Right-handed alpha
Helix 46
46
B
172 175Right-handed 310
Helix 47
47
B
188 198Right-handed alpha
Helix 48
48
B
215 234Right-handed alpha
Helix 49
49
B
235 241Right-handed 310
Helix 50
50
B
249 257Right-handed alpha
Helix 51
51
B
259 261Right-handed 310
Helix 52
52
B
271 275Right-handed 310
Helix 53
53
B
278 280Right-handed 310
Helix 54
54
B
281 289Right-handed alpha
Helix 55
55
B
289 310Right-handed alpha
Helix 56
56
B
311 314Right-handed 310
Helix 57
57
B
315 330Right-handed alpha
Helix 58
58
B
342 346Right-handed 310
Helix 59
59
B
347 361Right-handed alpha
Helix 60
60
B
386 391Right-handed alpha
Helix 61
61
B
391 398Right-handed alpha
Helix 62
62
B
416 418Right-handed 310
Helix 63
63
B
419 439Right-handed alpha
Helix 64
64
B
441 452Right-handed alpha
Helix 65
65
B
455 467Right-handed alpha
Helix 66
66
B
483 506Right-handed alpha
Helix 67
67
B
512 514Right-handed 310
Helix 68
68
B
515 526Right-handed alpha
Helix 69
69
B
527 530Right-handed 310
Helix 70
70
B
539 553Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2CXP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
474 481anti-parallel
Strand 4
A
404 411parallel
Strand 5
A
335 340parallel
Strand 6
A
378 380parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
151 155parallel
Strand 3
A
204 209parallel
Strand 4
A
243 247parallel
Strand 5
A
263 265parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
474 481anti-parallel
Strand 4
B
404 411parallel
Strand 5
B
335 340parallel
Strand 6
B
378 380parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
151 155parallel
Strand 3
B
204 209parallel
Strand 4
B
243 246parallel
Strand 5
B
263 264parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il