Analysis of interatomic Contacts of Structural Units in PDB entry:
2CY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2CY8 entry

There is 1 chain in PDB entry 2CY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2CY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
11 25Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
121 138Right-handed alpha
Helix 6
6
A
176 178Right-handed 310
Helix 7
7
A
187 199Right-handed alpha
Helix 8
8
A
212 216Right-handed alpha
Helix 9
9
A
220 234Right-handed alpha
Helix 10
10
A
252 259Right-handed alpha
Helix 11
11
A
270 273Right-handed 310
Helix 12
12
A
283 288Right-handed alpha
Helix 13
13
A
307 324Right-handed alpha
Helix 14
14
A
325 348Right-handed alpha
Helix 15
15
A
374 379Right-handed alpha
Helix 16
16
A
386 400Right-handed alpha
Helix 17
17
A
417 438Right-handed alpha
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There are 3 sheets in PDB entry 2CY8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
58 61anti-parallel
Strand 4
A
402 403parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
264 268anti-parallel
Strand 4
A
237 241parallel
Strand 5
A
202 207parallel
Strand 6
A
141 145parallel
Strand 7
A
180 183parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
409 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il