Analysis of interatomic Contacts of Structural Units in PDB entry:
2D04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D04 entry

There are 8 chains in PDB entry 2D04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 111
B
 ASP 1ARG 111
C
 ASP 1ASN 113
D
 ASP 1ARG 111
E
 ASP 1SER 111
F
 ASP 1ARG 110
G
 ASP 1ARG 110
H
 ASP 1ARG 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2D04

There are 24 sheets in PDB entry 2D04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
85 88anti-parallel
Strand 3
A
94 97anti-parallel
Strand 4
B
100 102anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
53 56anti-parallel
Strand 3
A
62 65anti-parallel
Strand 4
A
71 73anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
31 35anti-parallel
Strand 4
A
38 42anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
85 88anti-parallel
Strand 3
B
94 97anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
53 56anti-parallel
Strand 3
B
62 65anti-parallel
Strand 4
B
71 74anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
21 25anti-parallel
Strand 3
B
31 35anti-parallel
Strand 4
B
38 42anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
85 88anti-parallel
Strand 3
C
94 97anti-parallel
Strand 4
D
100 102anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
53 56anti-parallel
Strand 3
C
62 65anti-parallel
Strand 4
C
71 74anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 18first strand
Strand 2
C
21 25anti-parallel
Strand 3
C
31 35anti-parallel
Strand 4
C
38 42anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
85 88anti-parallel
Strand 3
D
94 97anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
53 56anti-parallel
Strand 3
D
62 65anti-parallel
Strand 4
D
71 74anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 18first strand
Strand 2
D
21 25anti-parallel
Strand 3
D
31 35anti-parallel
Strand 4
D
38 42anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
85 88anti-parallel
Strand 3
E
94 97anti-parallel
Strand 4
F
100 102anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 11first strand
Strand 2
E
53 56anti-parallel
Strand 3
E
62 66anti-parallel
Strand 4
E
70 74anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 18first strand
Strand 2
E
21 25anti-parallel
Strand 3
E
31 35anti-parallel
Strand 4
E
38 42anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 5first strand
Strand 2
F
85 88anti-parallel
Strand 3
F
94 97anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 10first strand
Strand 2
F
53 56anti-parallel
Strand 3
F
62 65anti-parallel
Strand 4
F
71 74anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 18first strand
Strand 2
F
21 25anti-parallel
Strand 3
F
31 35anti-parallel
Strand 4
F
38 42anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 5first strand
Strand 2
G
85 88anti-parallel
Strand 3
G
94 97anti-parallel
Strand 4
H
100 102anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 11first strand
Strand 2
G
53 56anti-parallel
Strand 3
G
62 65anti-parallel
Strand 4
G
71 74anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
14 18first strand
Strand 2
G
21 25anti-parallel
Strand 3
G
31 35anti-parallel
Strand 4
G
38 42anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 5first strand
Strand 2
H
85 88anti-parallel
Strand 3
H
94 97anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 10first strand
Strand 2
H
53 56anti-parallel
Strand 3
H
62 65anti-parallel
Strand 4
H
73 74anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
15 18first strand
Strand 2
H
21 25anti-parallel
Strand 3
H
31 35anti-parallel
Strand 4
H
38 42anti-parallel
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