Analysis of interatomic Contacts of Structural Units in PDB entry:
2D07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D07 entry

There are 2 chains in PDB entry 2D07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 113LYS 330
B
 ASN 15GLN 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2D07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 149Right-handed alpha
Helix 2
2
A
158 166Right-handed alpha
Helix 3
3
A
174 179Right-handed 310
Helix 4
4
A
180 186Right-handed alpha
Helix 5
5
A
204 223Right-handed alpha
Helix 6
6
A
231 243Right-handed alpha
Helix 7
7
A
281 284Right-handed 310
Helix 8
8
A
285 301Right-handed alpha
Helix 9
9
A
316 330Right-handed alpha
Helix 10
10
B
39 52Right-handed alpha
Helix 11
11
B
54 56Right-handed 310
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There are 3 sheets in PDB entry 2D07. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
195 196anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
134 138parallel
Strand 3
A
226 230parallel
Strand 4
A
265 269parallel
Strand 5
A
253 258anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 314first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
17 23anti-parallel
Strand 4
B
82 88parallel
Strand 5
B
58 62anti-parallel
Strand 6
B
65 66anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il