Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0C entry

There is 1 chain in PDB entry 2D0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ARG 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2D0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
57 64Right-handed alpha
Helix 3
3
A
79 81Right-handed 310
Helix 4
4
A
82 89Right-handed alpha
Helix 5
5
A
116 118Right-handed 310
Helix 6
6
A
119 125Right-handed alpha
Helix 7
7
A
135 148Right-handed alpha
Helix 8
8
A
158 167Right-handed alpha
Helix 9
9
A
171 192Right-handed alpha
Helix 10
10
A
206 213Right-handed alpha
Helix 11
11
A
230 234Right-handed 310
Helix 12
12
A
235 261Right-handed alpha
Helix 13
13
A
269 284Right-handed alpha
Helix 14
14
A
287 292Right-handed alpha
Helix 15
15
A
297 309Right-handed alpha
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There are 2 sheets in PDB entry 2D0C. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
32 38anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 157first strand
Strand 2
A
108 115anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
198 202parallel
Strand 5
A
225 228parallel
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