Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0H entry

There is 1 chain in PDB entry 2D0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2D0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
127 133Right-handed alpha
Helix 3
3
A
139 143Right-handed 310
Helix 4
4
A
147 151Right-handed 310
Helix 5
5
A
180 182Right-handed 310
Helix 6
6
A
189 196Right-handed alpha
Helix 7
7
A
196 202Right-handed alpha
Helix 8
8
A
237 250Right-handed alpha
Helix 9
9
A
294 298Right-handed 310
Helix 10
10
A
326 333Right-handed alpha
Helix 11
11
A
338 345Right-handed alpha
Helix 12
12
A
370 388Right-handed alpha
Helix 13
13
A
401 405Right-handed 310
Helix 14
14
A
420 429Right-handed alpha
Helix 15
15
A
441 454Right-handed alpha
Helix 16
16
A
457 464Right-handed alpha
Helix 17
17
A
475 480Right-handed alpha
Helix 18
18
A
483 497Right-handed alpha
Helix 19
19
A
506 510Right-handed 310
Helix 20
20
A
517 521Right-handed 310
Helix 21
21
A
524 528Right-handed 310
Helix 22
22
A
532 548Right-handed alpha
Helix 23
23
A
548 554Right-handed alpha
Helix 24
24
A
595 600Right-handed 310
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There are 11 sheets in PDB entry 2D0H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
64 68anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
107 109anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
118 120anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
392 395parallel
Strand 3
A
352 355parallel
Strand 4
A
258 263parallel
Strand 5
A
208 211parallel
Strand 6
A
135 138parallel
Strand 7
A
500 504parallel
Strand 8
A
465 467parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
162 163anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
184 185parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
227 231anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
306 307anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
313 317anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 562first strand
Strand 2
A
567 573anti-parallel
Strand 3
A
578 584anti-parallel
Strand 4
A
631 637anti-parallel
Strand 5
A
606 609anti-parallel
Strand 6
A
615 617anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
623 627anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il