Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2D0I entry

There are 4 chains in PDB entry 2D0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 333
B	MET 1	LEU 333
C	MET 1	LEU 333
D	MET 1	LEU 333

There are 76 helices in PDB entry 2D0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	21	Right-handed alpha
Helix 2	2	A	32	40	Right-handed alpha
Helix 3	3	A	41	43	Right-handed 310
Helix 4	4	A	55	60	Right-handed alpha
Helix 5	5	A	79	86	Right-handed alpha
Helix 6	6	A	94	115	Right-handed alpha
Helix 7	7	A	115	125	Right-handed alpha
Helix 8	8	A	130	136	Right-handed alpha
Helix 9	9	A	155	166	Right-handed alpha
Helix 10	10	A	167	169	Right-handed 310
Helix 11	11	A	180	188	Right-handed alpha
Helix 12	12	A	193	201	Right-handed alpha
Helix 13	13	A	219	226	Right-handed alpha
Helix 14	14	A	236	240	Right-handed 310
Helix 15	15	A	241	251	Right-handed alpha
Helix 16	16	A	270	275	Right-handed 310
Helix 17	17	A	289	309	Right-handed alpha
Helix 18	18	A	320	325	Right-handed alpha
Helix 19	19	A	326	331	Right-handed 310
Helix 20	20	B	12	23	Right-handed alpha
Helix 21	21	B	32	38	Right-handed alpha
Helix 22	22	B	39	43	Right-handed 310
Helix 23	23	B	55	60	Right-handed alpha
Helix 24	24	B	79	86	Right-handed alpha
Helix 25	25	B	95	115	Right-handed alpha
Helix 26	26	B	115	125	Right-handed alpha
Helix 27	27	B	130	138	Right-handed alpha
Helix 28	28	B	155	166	Right-handed alpha
Helix 29	29	B	167	169	Right-handed 310
Helix 30	30	B	180	187	Right-handed alpha
Helix 31	31	B	193	201	Right-handed alpha
Helix 32	32	B	219	226	Right-handed alpha
Helix 33	33	B	236	240	Right-handed 310
Helix 34	34	B	241	251	Right-handed alpha
Helix 35	35	B	270	275	Right-handed 310
Helix 36	36	B	289	309	Right-handed alpha
Helix 37	37	B	318	324	Right-handed 310
Helix 38	38	B	326	331	Right-handed 310
Helix 39	39	C	12	23	Right-handed alpha
Helix 40	40	C	32	38	Right-handed alpha
Helix 41	41	C	39	43	Right-handed 310
Helix 42	42	C	55	60	Right-handed alpha
Helix 43	43	C	79	86	Right-handed alpha
Helix 44	44	C	94	115	Right-handed alpha
Helix 45	45	C	115	125	Right-handed alpha
Helix 46	46	C	130	136	Right-handed alpha
Helix 47	47	C	155	166	Right-handed alpha
Helix 48	48	C	167	169	Right-handed 310
Helix 49	49	C	180	188	Right-handed alpha
Helix 50	50	C	193	201	Right-handed alpha
Helix 51	51	C	219	226	Right-handed alpha
Helix 52	52	C	236	240	Right-handed 310
Helix 53	53	C	241	251	Right-handed alpha
Helix 54	54	C	270	275	Right-handed 310
Helix 55	55	C	289	309	Right-handed alpha
Helix 56	56	C	320	325	Right-handed alpha
Helix 57	57	C	326	331	Right-handed 310
Helix 58	58	D	12	21	Right-handed alpha
Helix 59	59	D	32	40	Right-handed alpha
Helix 60	60	D	41	43	Right-handed 310
Helix 61	61	D	55	60	Right-handed alpha
Helix 62	62	D	79	86	Right-handed alpha
Helix 63	63	D	95	115	Right-handed alpha
Helix 64	64	D	115	125	Right-handed alpha
Helix 65	65	D	130	138	Right-handed alpha
Helix 66	66	D	155	166	Right-handed alpha
Helix 67	67	D	167	169	Right-handed 310
Helix 68	68	D	180	188	Right-handed alpha
Helix 69	69	D	193	201	Right-handed alpha
Helix 70	70	D	219	226	Right-handed alpha
Helix 71	71	D	236	240	Right-handed 310
Helix 72	72	D	241	251	Right-handed alpha
Helix 73	73	D	270	275	Right-handed 310
Helix 74	74	D	289	309	Right-handed alpha
Helix 75	75	D	320	325	Right-handed alpha
Helix 76	76	D	326	331	Right-handed 310

There are 8 sheets in PDB entry 2D0I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	4	7	parallel
Strand 3	A	45	48	parallel
Strand 4	A	67	70	parallel
Strand 5	A	89	91	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	171	175	parallel
Strand 3	A	148	152	parallel
Strand 4	A	203	206	parallel
Strand 5	A	230	233	parallel
Strand 6	A	256	259	parallel
Strand 7	A	279	281	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	4	7	parallel
Strand 3	B	45	48	parallel
Strand 4	B	67	70	parallel
Strand 5	B	89	91	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	171	175	parallel
Strand 3	B	148	152	parallel
Strand 4	B	203	206	parallel
Strand 5	B	230	233	parallel
Strand 6	B	256	259	parallel
Strand 7	B	279	281	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	4	7	parallel
Strand 3	C	45	48	parallel
Strand 4	C	67	70	parallel
Strand 5	C	89	91	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	171	175	parallel
Strand 3	C	148	152	parallel
Strand 4	C	203	206	parallel
Strand 5	C	230	233	parallel
Strand 6	C	256	259	parallel
Strand 7	C	279	281	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	4	7	parallel
Strand 3	D	45	48	parallel
Strand 4	D	67	70	parallel
Strand 5	D	89	91	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	171	175	parallel
Strand 3	D	148	152	parallel
Strand 4	D	203	206	parallel
Strand 5	D	230	233	parallel
Strand 6	D	256	259	parallel
Strand 7	D	279	281	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2D0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0I