Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2D0J entry

There are 4 chains in PDB entry 2D0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 78	VAL 323
B	GLN 78	VAL 323
C	GLN 78	VAL 323
D	LEU 79	VAL 323

There are 37 helices in PDB entry 2D0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	93	106	Right-handed alpha
Helix 2	2	A	123	133	Right-handed alpha
Helix 3	3	A	156	171	Right-handed alpha
Helix 4	4	A	192	199	Right-handed alpha
Helix 5	5	A	243	245	Right-handed 310
Helix 6	6	A	251	257	Right-handed alpha
Helix 7	7	A	268	270	Right-handed 310
Helix 8	8	A	271	279	Right-handed alpha
Helix 9	9	A	282	286	Right-handed 310
Helix 10	10	A	289	294	Right-handed alpha
Helix 11	11	B	93	106	Right-handed alpha
Helix 12	12	B	123	132	Right-handed alpha
Helix 13	13	B	156	171	Right-handed alpha
Helix 14	14	B	192	200	Right-handed alpha
Helix 15	15	B	243	245	Right-handed 310
Helix 16	16	B	251	257	Right-handed alpha
Helix 17	17	B	271	279	Right-handed alpha
Helix 18	18	B	282	286	Right-handed 310
Helix 19	19	B	289	294	Right-handed alpha
Helix 20	20	C	93	106	Right-handed alpha
Helix 21	21	C	123	134	Right-handed alpha
Helix 22	22	C	156	171	Right-handed alpha
Helix 23	23	C	192	199	Right-handed alpha
Helix 24	24	C	243	245	Right-handed 310
Helix 25	25	C	251	257	Right-handed alpha
Helix 26	26	C	271	279	Right-handed alpha
Helix 27	27	C	282	286	Right-handed 310
Helix 28	28	C	289	294	Right-handed alpha
Helix 29	29	D	93	106	Right-handed alpha
Helix 30	30	D	123	134	Right-handed alpha
Helix 31	31	D	156	171	Right-handed alpha
Helix 32	32	D	192	200	Right-handed alpha
Helix 33	33	D	243	245	Right-handed 310
Helix 34	34	D	251	257	Right-handed alpha
Helix 35	35	D	271	281	Right-handed alpha
Helix 36	36	D	282	286	Right-handed 310
Helix 37	37	D	289	294	Right-handed alpha

There are 12 sheets in PDB entry 2D0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	111	117	parallel
Strand 3	A	82	88	parallel
Strand 4	A	180	183	parallel
Strand 5	A	247	250	anti-parallel
Strand 6	A	204	206	anti-parallel
Strand 7	A	287	288	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	298	299	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	215	223	anti-parallel
Strand 3	A	226	231	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	111	117	parallel
Strand 3	B	81	88	parallel
Strand 4	B	179	183	parallel
Strand 5	B	247	250	anti-parallel
Strand 6	B	204	206	anti-parallel
Strand 7	B	287	288	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	298	299	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	217	223	anti-parallel
Strand 3	B	226	231	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	111	117	parallel
Strand 3	C	81	88	parallel
Strand 4	C	179	183	parallel
Strand 5	C	247	250	anti-parallel
Strand 6	C	204	206	anti-parallel
Strand 7	C	287	288	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	298	299	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	215	223	anti-parallel
Strand 3	C	226	231	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	111	117	parallel
Strand 3	D	82	88	parallel
Strand 4	D	180	183	parallel
Strand 5	D	247	250	anti-parallel
Strand 6	D	204	206	anti-parallel
Strand 7	D	287	288	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	298	299	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	215	222	anti-parallel
Strand 3	D	227	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2D0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0J