Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0L entry

There is 1 chain in PDB entry 2D0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 40ALA 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2D0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
45 52Right-handed alpha
Helix 2
2
B
57 62Right-handed alpha
Helix 3
3
B
97 103Right-handed alpha
Helix 4
4
B
142 148Right-handed alpha
Helix 5
5
B
164 172Right-handed alpha
Helix 6
6
B
193 201Right-handed alpha
Helix 7
7
B
224 229Right-handed alpha
Helix 8
8
B
259 263Right-handed 310
Helix 9
9
B
278 283Right-handed alpha
Helix 10
10
B
334 336Right-handed 310
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There are 6 sheets in PDB entry 2D0L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
91 94anti-parallel
Strand 3
B
113 114anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
129 132anti-parallel
Strand 3
B
269 271parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 159first strand
Strand 2
B
183 192anti-parallel
Strand 3
B
233 238anti-parallel
Strand 4
B
241 242anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 159first strand
Strand 2
B
183 192anti-parallel
Strand 3
B
233 238anti-parallel
Strand 4
B
252 254anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 310first strand
Strand 2
B
327 332anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
339 343anti-parallel
Strand 3
B
381 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il