Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0O entry

There are 4 chains in PDB entry 2D0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 606
B
 HIS 5ARG 112
C
 MET 1LYS 604
D
 SER 6ASP 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2D0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 45Right-handed 310
Helix 2
2
A
46 62Right-handed alpha
Helix 3
3
A
64 66Right-handed 310
Helix 4
4
A
118 124Right-handed 310
Helix 5
5
A
140 154Right-handed alpha
Helix 6
6
A
167 174Right-handed alpha
Helix 7
7
A
187 191Right-handed 310
Helix 8
8
A
213 221Right-handed alpha
Helix 9
9
A
224 231Right-handed alpha
Helix 10
10
A
231 238Right-handed alpha
Helix 11
11
A
280 289Right-handed alpha
Helix 12
12
A
303 320Right-handed alpha
Helix 13
13
A
323 327Right-handed 310
Helix 14
14
A
369 382Right-handed alpha
Helix 15
15
A
391 400Right-handed alpha
Helix 16
16
A
438 451Right-handed alpha
Helix 17
17
A
454 464Right-handed alpha
Helix 18
18
A
490 494Right-handed 310
Helix 19
19
A
513 541Right-handed alpha
Helix 20
20
A
545 549Right-handed 310
Helix 21
21
A
556 561Right-handed 310
Helix 22
22
A
563 572Right-handed alpha
Helix 23
23
A
583 587Right-handed 310
Helix 24
24
A
592 606Right-handed alpha
Helix 25
25
B
18 21Right-handed 310
Helix 26
26
B
22 32Right-handed alpha
Helix 27
27
B
45 56Right-handed alpha
Helix 28
28
B
91 107Right-handed alpha
Helix 29
29
C
43 45Right-handed 310
Helix 30
30
C
46 61Right-handed alpha
Helix 31
31
C
64 66Right-handed 310
Helix 32
32
C
118 123Right-handed 310
Helix 33
33
C
140 155Right-handed alpha
Helix 34
34
C
167 174Right-handed alpha
Helix 35
35
C
187 191Right-handed 310
Helix 36
36
C
213 222Right-handed alpha
Helix 37
37
C
224 231Right-handed alpha
Helix 38
38
C
231 238Right-handed alpha
Helix 39
39
C
280 291Right-handed alpha
Helix 40
40
C
303 321Right-handed alpha
Helix 41
41
C
323 327Right-handed 310
Helix 42
42
C
369 382Right-handed alpha
Helix 43
43
C
391 400Right-handed alpha
Helix 44
44
C
438 450Right-handed alpha
Helix 45
45
C
454 464Right-handed alpha
Helix 46
46
C
490 494Right-handed 310
Helix 47
47
C
513 541Right-handed alpha
Helix 48
48
C
545 549Right-handed 310
Helix 49
49
C
556 561Right-handed 310
Helix 50
50
C
563 573Right-handed alpha
Helix 51
51
C
583 587Right-handed 310
Helix 52
52
C
592 604Right-handed alpha
Helix 53
53
D
18 21Right-handed 310
Helix 54
54
D
22 32Right-handed alpha
Helix 55
55
D
45 57Right-handed alpha
Helix 56
56
D
91 108Right-handed alpha
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There are 16 sheets in PDB entry 2D0O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 36first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
2 9anti-parallel
Strand 4
A
68 75parallel
Strand 5
A
384 390parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 87first strand
Strand 2
A
351 364anti-parallel
Strand 3
A
329 342anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
254 258anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
110 117anti-parallel
Strand 5
A
130 135parallel
Strand 6
A
157 163parallel
Strand 7
A
181 182parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
263 268anti-parallel
Strand 3
A
296 298anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 436first strand
Strand 2
A
418 424anti-parallel
Strand 3
A
409 414anti-parallel
Strand 4
A
551 555parallel
Strand 5
A
578 581parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
474 477anti-parallel
Strand 3
A
466 469anti-parallel
Strand 4
A
497 500anti-parallel
Strand 5
A
505 507anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
10 15parallel
Strand 3
B
61 65parallel
Strand 4
B
69 74anti-parallel
Strand 5
B
84 87anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 36first strand
Strand 2
C
13 21anti-parallel
Strand 3
C
2 9anti-parallel
Strand 4
C
68 75parallel
Strand 5
C
384 390parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 87first strand
Strand 2
C
351 364anti-parallel
Strand 3
C
329 342anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
253 258anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
243 247anti-parallel
Strand 3
C
196 201anti-parallel
Strand 4
C
110 117anti-parallel
Strand 5
C
131 135parallel
Strand 6
C
158 163parallel
Strand 7
C
181 182parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 276first strand
Strand 2
C
263 268anti-parallel
Strand 3
C
296 298anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 436first strand
Strand 2
C
418 424anti-parallel
Strand 3
C
409 414anti-parallel
Strand 4
C
551 555parallel
Strand 5
C
578 581parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
482 484first strand
Strand 2
C
474 477anti-parallel
Strand 3
C
466 471anti-parallel
Strand 4
C
497 500anti-parallel
Strand 5
C
505 507anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
10 15parallel
Strand 3
D
61 65parallel
Strand 4
D
69 74anti-parallel
Strand 5
D
84 87anti-parallel
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