Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0P entry

There are 4 chains in PDB entry 2D0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 606
B
 ASN 4ASP 113
C
 MET 1GLU 605
D
 HIS 5ASP 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2D0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 61Right-handed alpha
Helix 2
2
A
64 66Right-handed 310
Helix 3
3
A
120 125Right-handed alpha
Helix 4
4
A
140 155Right-handed alpha
Helix 5
5
A
167 173Right-handed alpha
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
A
213 222Right-handed alpha
Helix 8
8
A
227 239Right-handed alpha
Helix 9
9
A
280 291Right-handed alpha
Helix 10
10
A
303 318Right-handed alpha
Helix 11
11
A
323 327Right-handed 310
Helix 12
12
A
369 382Right-handed alpha
Helix 13
13
A
390 400Right-handed alpha
Helix 14
14
A
438 450Right-handed alpha
Helix 15
15
A
454 464Right-handed alpha
Helix 16
16
A
513 540Right-handed alpha
Helix 17
17
A
556 561Right-handed 310
Helix 18
18
A
563 573Right-handed alpha
Helix 19
19
A
583 587Right-handed 310
Helix 20
20
A
592 605Right-handed alpha
Helix 21
21
B
17 21Right-handed 310
Helix 22
22
B
22 33Right-handed alpha
Helix 23
23
B
45 57Right-handed alpha
Helix 24
24
B
91 105Right-handed alpha
Helix 25
25
C
45 61Right-handed alpha
Helix 26
26
C
64 66Right-handed 310
Helix 27
27
C
120 125Right-handed alpha
Helix 28
28
C
140 155Right-handed alpha
Helix 29
29
C
167 173Right-handed alpha
Helix 30
30
C
213 222Right-handed alpha
Helix 31
31
C
227 239Right-handed alpha
Helix 32
32
C
280 290Right-handed alpha
Helix 33
33
C
303 313Right-handed alpha
Helix 34
34
C
369 382Right-handed alpha
Helix 35
35
C
390 400Right-handed alpha
Helix 36
36
C
438 450Right-handed alpha
Helix 37
37
C
454 464Right-handed alpha
Helix 38
38
C
513 541Right-handed alpha
Helix 39
39
C
545 549Right-handed 310
Helix 40
40
C
556 561Right-handed 310
Helix 41
41
C
563 573Right-handed alpha
Helix 42
42
C
583 587Right-handed 310
Helix 43
43
C
592 604Right-handed alpha
Helix 44
44
D
17 21Right-handed 310
Helix 45
45
D
22 33Right-handed alpha
Helix 46
46
D
45 57Right-handed alpha
Helix 47
47
D
91 105Right-handed alpha
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There are 17 sheets in PDB entry 2D0P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 36first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
2 9anti-parallel
Strand 4
A
68 73parallel
Strand 5
A
384 387parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
351 364anti-parallel
Strand 3
A
331 342anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
253 258anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
110 117anti-parallel
Strand 5
A
131 133parallel
Strand 6
A
158 162parallel
Strand 7
A
181 182parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
263 268anti-parallel
Strand 3
A
296 299anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 436first strand
Strand 2
A
418 424anti-parallel
Strand 3
A
409 414anti-parallel
Strand 4
A
551 555parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
497 500anti-parallel
Strand 3
A
505 507anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
482 484anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
10 15parallel
Strand 3
B
61 65parallel
Strand 4
B
69 74anti-parallel
Strand 5
B
84 87anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 36first strand
Strand 2
C
13 21anti-parallel
Strand 3
C
2 9anti-parallel
Strand 4
C
68 73parallel
Strand 5
C
384 387parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 87first strand
Strand 2
C
351 364anti-parallel
Strand 3
C
331 342anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
253 258anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 99first strand
Strand 2
C
243 247anti-parallel
Strand 3
C
196 201anti-parallel
Strand 4
C
110 117anti-parallel
Strand 5
C
131 134parallel
Strand 6
C
158 162parallel
Strand 7
C
181 182parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 276first strand
Strand 2
C
263 268anti-parallel
Strand 3
C
296 298anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 436first strand
Strand 2
C
418 424anti-parallel
Strand 3
C
409 414anti-parallel
Strand 4
C
551 555parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
482 484first strand
Strand 2
C
474 476anti-parallel
Strand 3
C
466 471anti-parallel
Strand 4
C
497 500anti-parallel
Strand 5
C
505 507anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
10 15parallel
Strand 3
D
61 65parallel
Strand 4
D
69 74anti-parallel
Strand 5
D
84 87anti-parallel
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