Analysis of interatomic Contacts of Structural Units in PDB entry:
2D0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D0V entry

There are 6 chains in PDB entry 2D0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 1GLY 597
B
TYR 1LYS 70
D
ASN 1GLY 597
E
TYR 1VAL 68
I
ASN 1GLU 595
J
TYR 1LYS 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2D0V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1 9Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
95 102Right-handed 310
Helix 4
4
A
151 155Right-handed 310
Helix 5
5
A
175 179Right-handed 310
Helix 6
6
A
203 208Right-handed alpha
Helix 7
7
A
217 221Right-handed 310
Helix 8
8
A
224 229Right-handed alpha
Helix 9
9
A
231 238Right-handed 310
Helix 10
10
A
266 270Right-handed 310
Helix 11
11
A
372 375Right-handed 310
Helix 12
12
A
539 541Right-handed 310
Helix 13
13
A
542 548Right-handed alpha
Helix 14
14
A
554 556Right-handed 310
Helix 15
15
A
557 562Right-handed alpha
Helix 16
16
A
564 568Right-handed 310
Helix 17
17
A
582 583Right-handed 310
Helix 18
18
A
584 588Right-handed 310
Helix 19
19
B
33 38Right-handed alpha
Helix 20
20
B
38 62Right-handed alpha
Helix 21
21
D
1 9Right-handed alpha
Helix 22
22
D
36 38Right-handed 310
Helix 23
23
D
95 102Right-handed 310
Helix 24
24
D
151 155Right-handed 310
Helix 25
25
D
175 179Right-handed 310
Helix 26
26
D
203 208Right-handed alpha
Helix 27
27
D
217 221Right-handed 310
Helix 28
28
D
224 229Right-handed alpha
Helix 29
29
D
233 238Right-handed 310
Helix 30
30
D
266 270Right-handed 310
Helix 31
31
D
372 375Right-handed 310
Helix 32
32
D
542 548Right-handed alpha
Helix 33
33
D
554 556Right-handed 310
Helix 34
34
D
557 562Right-handed alpha
Helix 35
35
D
564 568Right-handed 310
Helix 36
36
D
582 583Right-handed 310
Helix 37
37
D
584 588Right-handed 310
Helix 38
38
E
33 38Right-handed alpha
Helix 39
39
E
38 62Right-handed alpha
Helix 40
40
I
1 8Right-handed alpha
Helix 41
41
I
36 38Right-handed 310
Helix 42
42
I
97 102Right-handed alpha
Helix 43
43
I
151 155Right-handed 310
Helix 44
44
I
175 179Right-handed 310
Helix 45
45
I
203 208Right-handed alpha
Helix 46
46
I
217 221Right-handed 310
Helix 47
47
I
224 229Right-handed alpha
Helix 48
48
I
233 238Right-handed 310
Helix 49
49
I
266 270Right-handed 310
Helix 50
50
I
372 375Right-handed 310
Helix 51
51
I
539 541Right-handed 310
Helix 52
52
I
542 547Right-handed alpha
Helix 53
53
I
554 556Right-handed 310
Helix 54
54
I
557 562Right-handed alpha
Helix 55
55
I
564 568Right-handed 310
Helix 56
56
I
582 583Right-handed 310
Helix 57
57
I
584 588Right-handed 310
Helix 58
58
J
33 38Right-handed alpha
Helix 59
59
J
38 62Right-handed alpha
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There are 31 sheets in PDB entry 2D0V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 27first strand
Strand 2
A
480 482parallel
Strand 3
A
486 490anti-parallel
Strand 4
A
495 500anti-parallel
Strand 5
A
506 511anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 47first strand
Strand 2
A
574 580anti-parallel
Strand 3
A
528 535anti-parallel
Strand 4
A
521 525anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
75 79anti-parallel
Strand 4
A
82 90anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 114first strand
Strand 2
A
123 127anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
143 148anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 165first strand
Strand 2
A
168 171anti-parallel
Strand 3
A
183 188anti-parallel
Strand 4
A
194 199anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
247 249first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
279 284anti-parallel
Strand 4
A
290 295anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 316first strand
Strand 2
A
322 329anti-parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
345 350anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
358 361first strand
Strand 2
A
368 370anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
382 385first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
434 440anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
399 401first strand
Strand 2
A
406 412anti-parallel
Strand 3
A
453 458anti-parallel
Strand 4
A
465 471anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
26 27first strand
Strand 2
D
479 482parallel
Strand 3
D
486 490anti-parallel
Strand 4
D
495 500anti-parallel
Strand 5
D
506 511anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
40 47first strand
Strand 2
D
574 580anti-parallel
Strand 3
D
528 535anti-parallel
Strand 4
D
521 525anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
55 56first strand
Strand 2
D
517 518parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
59 61first strand
Strand 2
D
64 68anti-parallel
Strand 3
D
75 79anti-parallel
Strand 4
D
86 90anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
112 114first strand
Strand 2
D
123 127anti-parallel
Strand 3
D
132 137anti-parallel
Strand 4
D
143 148anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
163 165first strand
Strand 2
D
168 171anti-parallel
Strand 3
D
183 188anti-parallel
Strand 4
D
194 199anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
247 249first strand
Strand 2
D
254 258anti-parallel
Strand 3
D
279 284anti-parallel
Strand 4
D
290 295anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
311 316first strand
Strand 2
D
322 329anti-parallel
Strand 3
D
334 339anti-parallel
Strand 4
D
345 350anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
358 361first strand
Strand 2
D
368 370anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
382 385first strand
Strand 2
D
414 420anti-parallel
Strand 3
D
434 440anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
399 401first strand
Strand 2
D
406 412anti-parallel
Strand 3
D
453 459anti-parallel
Strand 4
D
464 471anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
26 27first strand
Strand 2
I
480 482parallel
Strand 3
I
486 490anti-parallel
Strand 4
I
495 500anti-parallel
Strand 5
I
506 511anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
40 47first strand
Strand 2
I
574 580anti-parallel
Strand 3
I
528 535anti-parallel
Strand 4
I
521 525anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
59 61first strand
Strand 2
I
64 68anti-parallel
Strand 3
I
75 79anti-parallel
Strand 4
I
86 90anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
112 114first strand
Strand 2
I
123 127anti-parallel
Strand 3
I
132 137anti-parallel
Strand 4
I
143 148anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
163 165first strand
Strand 2
I
168 171anti-parallel
Strand 3
I
183 188anti-parallel
Strand 4
I
194 199anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
247 249first strand
Strand 2
I
254 258anti-parallel
Strand 3
I
279 284anti-parallel
Strand 4
I
290 295anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
311 316first strand
Strand 2
I
322 329anti-parallel
Strand 3
I
334 339anti-parallel
Strand 4
I
345 350anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
358 361first strand
Strand 2
I
368 370anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
382 385first strand
Strand 2
I
414 420anti-parallel
Strand 3
I
434 440anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
399 401first strand
Strand 2
I
406 412anti-parallel
Strand 3
I
453 459anti-parallel
Strand 4
I
464 471anti-parallel
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