Analysis of interatomic Contacts of Structural Units in PDB entry:
2D16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D16 entry

There are 4 chains in PDB entry 2D16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 162
B
 VAL 2ASP 162
C
 MET 1ASP 162
D
 VAL 2ASP 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2D16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 40Right-handed alpha
Helix 2
2
A
63 78Right-handed alpha
Helix 3
3
A
91 101Right-handed alpha
Helix 4
4
A
143 158Right-handed alpha
Helix 5
5
B
24 40Right-handed alpha
Helix 6
6
B
63 78Right-handed alpha
Helix 7
7
B
91 101Right-handed alpha
Helix 8
8
B
143 158Right-handed alpha
Helix 9
9
C
24 40Right-handed alpha
Helix 10
10
C
63 78Right-handed alpha
Helix 11
11
C
91 101Right-handed alpha
Helix 12
12
C
143 158Right-handed alpha
Helix 13
13
D
24 40Right-handed alpha
Helix 14
14
D
63 78Right-handed alpha
Helix 15
15
D
91 101Right-handed alpha
Helix 16
16
D
143 158Right-handed alpha
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There are 8 sheets in PDB entry 2D16. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
116 122anti-parallel
Strand 3
A
127 134anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
44 51anti-parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
16 22anti-parallel
Strand 5
A
105 112anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
116 122anti-parallel
Strand 3
B
127 134anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
44 51anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
16 22anti-parallel
Strand 5
B
105 112anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
116 122anti-parallel
Strand 3
C
127 134anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
44 51anti-parallel
Strand 3
C
82 88anti-parallel
Strand 4
C
16 22anti-parallel
Strand 5
C
105 112anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
116 122anti-parallel
Strand 3
D
127 134anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 61first strand
Strand 2
D
44 51anti-parallel
Strand 3
D
82 88anti-parallel
Strand 4
D
16 22anti-parallel
Strand 5
D
105 112anti-parallel
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