Analysis of interatomic Contacts of Structural Units in PDB entry:
2D1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D1L entry

There are 2 chains in PDB entry 2D1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2GLN 246
B
 ALA -2SER 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2D1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 25Right-handed alpha
Helix 2
2
A
26 67Right-handed alpha
Helix 3
3
A
70 104Right-handed alpha
Helix 4
4
A
104 151Right-handed alpha
Helix 5
5
A
153 157Right-handed 310
Helix 6
6
A
161 215Right-handed alpha
Helix 7
7
A
216 218Right-handed 310
Helix 8
8
A
219 234Right-handed alpha
Helix 9
9
A
241 245Right-handed 310
Helix 10
10
B
-1 13Right-handed alpha
Helix 11
11
B
14 25Right-handed alpha
Helix 12
12
B
26 67Right-handed alpha
Helix 13
13
B
70 104Right-handed alpha
Helix 14
14
B
104 149Right-handed alpha
Helix 15
15
B
169 219Right-handed alpha
Helix 16
16
B
222 234Right-handed alpha
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There are no sheets in PDB entry 2D1L
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il