Analysis of interatomic Contacts of Structural Units in PDB entry:
2D1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D1R entry

There are 2 chains in PDB entry 2D1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7SER 62
A
 LEU 65VAL 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2D1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 40Right-handed alpha
Helix 2
2
A
55 73Right-handed alpha
Helix 3
3
A
90 101Right-handed alpha
Helix 4
4
A
112 124Right-handed alpha
Helix 5
5
A
134 145Right-handed alpha
Helix 6
6
A
165 173Right-handed alpha
Helix 7
7
A
179 183Right-handed 310
Helix 8
8
A
214 225Right-handed alpha
Helix 9
9
A
247 260Right-handed alpha
Helix 10
10
A
271 282Right-handed alpha
Helix 11
11
A
290 292Right-handed 310
Helix 12
12
A
293 300Right-handed alpha
Helix 13
13
A
302 306Right-handed 310
Helix 14
14
A
322 333Right-handed alpha
Helix 15
15
A
345 348Right-handed 310
Helix 16
16
A
406 414Right-handed alpha
Helix 17
17
A
441 443Right-handed 310
Helix 18
18
A
452 462Right-handed alpha
Helix 19
19
A
496 508Right-handed alpha
Helix 20
20
A
509 513Right-handed 310
Helix 21
21
A
533 543Right-handed alpha
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There are 5 sheets in PDB entry 2D1R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
390 395anti-parallel
Strand 4
A
420 428anti-parallel
Strand 5
A
434 439anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
263 266parallel
Strand 4
A
238 241parallel
Strand 5
A
284 289parallel
Strand 6
A
313 316parallel
Strand 7
A
339 343parallel
Strand 8
A
350 353anti-parallel
Strand 9
A
366 367anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
79 83parallel
Strand 3
A
127 130parallel
Strand 4
A
150 153parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
210 213anti-parallel
Strand 3
A
402 403anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 476first strand
Strand 2
A
480 489anti-parallel
Strand 3
A
518 520parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il