Analysis of interatomic Contacts of Structural Units in PDB entry:
2D29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D29 entry

There are 2 chains in PDB entry 2D29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2VAL 387
B
 GLY 2VAL 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2D29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 26Right-handed alpha
Helix 2
2
A
29 37Right-handed alpha
Helix 3
3
A
40 49Right-handed alpha
Helix 4
4
A
50 55Right-handed 310
Helix 5
5
A
58 62Right-handed 310
Helix 6
6
A
67 82Right-handed alpha
Helix 7
7
A
82 95Right-handed alpha
Helix 8
8
A
95 104Right-handed alpha
Helix 9
9
A
105 118Right-handed alpha
Helix 10
10
A
135 139Right-handed 310
Helix 11
11
A
179 183Right-handed 310
Helix 12
12
A
236 274Right-handed alpha
Helix 13
13
A
284 314Right-handed alpha
Helix 14
14
A
318 345Right-handed alpha
Helix 15
15
A
346 350Right-handed 310
Helix 16
16
A
354 363Right-handed alpha
Helix 17
17
A
364 367Right-handed 310
Helix 18
18
A
371 386Right-handed alpha
Helix 19
19
B
8 26Right-handed alpha
Helix 20
20
B
29 37Right-handed alpha
Helix 21
21
B
40 50Right-handed alpha
Helix 22
22
B
58 62Right-handed 310
Helix 23
23
B
67 82Right-handed alpha
Helix 24
24
B
82 95Right-handed alpha
Helix 25
25
B
95 104Right-handed alpha
Helix 26
26
B
105 118Right-handed alpha
Helix 27
27
B
135 139Right-handed 310
Helix 28
28
B
179 183Right-handed 310
Helix 29
29
B
236 274Right-handed alpha
Helix 30
30
B
284 314Right-handed alpha
Helix 31
31
B
318 345Right-handed alpha
Helix 32
32
B
346 350Right-handed 310
Helix 33
33
B
354 363Right-handed alpha
Helix 34
34
B
364 367Right-handed 310
Helix 35
35
B
371 386Right-handed alpha
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There are 6 sheets in PDB entry 2D29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
167 173parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
230 231anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
149 160anti-parallel
Strand 3
A
215 226anti-parallel
Strand 4
A
199 201anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
279 280anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
167 173parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
230 231anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
149 160anti-parallel
Strand 3
B
215 226anti-parallel
Strand 4
B
199 201anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
279 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il