Analysis of interatomic Contacts of Structural Units in PDB entry:
2D2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D2M entry

There are 4 chains in PDB entry 2D2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLY 140
B
 ASP 1GLY 142
C
 SER 2LEU 147
D
 GLU 1LEU 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2D2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
23 38Right-handed alpha
Helix 3
3
A
39 47Right-handed 310
Helix 4
4
A
56 75Right-handed alpha
Helix 5
5
A
79 94Right-handed alpha
Helix 6
6
A
100 115Right-handed alpha
Helix 7
7
A
116 119Right-handed 310
Helix 8
8
A
123 138Right-handed alpha
Helix 9
9
B
3 18Right-handed alpha
Helix 10
10
B
22 38Right-handed alpha
Helix 11
11
B
39 47Right-handed 310
Helix 12
12
B
56 77Right-handed alpha
Helix 13
13
B
79 95Right-handed alpha
Helix 14
14
B
102 120Right-handed alpha
Helix 15
15
B
125 141Right-handed alpha
Helix 16
16
C
5 18Right-handed alpha
Helix 17
17
C
24 42Right-handed alpha
Helix 18
18
C
43 48Right-handed alpha
Helix 19
19
C
49 51Right-handed 310
Helix 20
20
C
60 79Right-handed alpha
Helix 21
21
C
83 100Right-handed alpha
Helix 22
22
C
107 120Right-handed alpha
Helix 23
23
C
121 123Right-handed 310
Helix 24
24
C
128 145Right-handed alpha
Helix 25
25
D
4 19Right-handed alpha
Helix 26
26
D
27 44Right-handed alpha
Helix 27
27
D
58 77Right-handed alpha
Helix 28
28
D
81 98Right-handed alpha
Helix 29
29
D
103 122Right-handed alpha
Helix 30
30
D
126 142Right-handed alpha
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There are no sheets in PDB entry 2D2M
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il