Analysis of interatomic Contacts of Structural Units in PDB entry:
2D3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D3Y entry

There is 1 chain in PDB entry 2D3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2D3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
16 26Right-handed alpha
Helix 3
3
A
30 34Right-handed 310
Helix 4
4
A
64 69Right-handed alpha
Helix 5
5
A
75 88Right-handed alpha
Helix 6
6
A
117 121Right-handed 310
Helix 7
7
A
123 140Right-handed alpha
Helix 8
8
A
151 163Right-handed alpha
Helix 9
9
A
192 199Right-handed alpha
Helix 10
10
A
202 217Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2D3Y.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
53 57parallel
Strand 4
A
146 150parallel
Strand 5
A
183 188parallel
Strand 6
A
176 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il