Analysis of interatomic Contacts of Structural Units in PDB entry:
2D4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D4V entry

There are 4 chains in PDB entry 2D4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3PHE 429
B
 THR 3PHE 429
C
 THR 3PHE 429
D
 THR 3PHE 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 2D4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 58Right-handed alpha
Helix 2
2
A
71 79Right-handed alpha
Helix 3
3
A
85 96Right-handed alpha
Helix 4
4
A
113 122Right-handed alpha
Helix 5
5
A
143 146Right-handed 310
Helix 6
6
A
157 162Right-handed 310
Helix 7
7
A
169 182Right-handed alpha
Helix 8
8
A
190 192Right-handed 310
Helix 9
9
A
203 220Right-handed alpha
Helix 10
10
A
237 253Right-handed alpha
Helix 11
11
A
260 271Right-handed alpha
Helix 12
12
A
271 285Right-handed alpha
Helix 13
13
A
295 305Right-handed alpha
Helix 14
14
A
306 309Right-handed 310
Helix 15
15
A
315 330Right-handed alpha
Helix 16
16
A
331 336Right-handed 310
Helix 17
17
A
366 380Right-handed alpha
Helix 18
18
A
382 399Right-handed alpha
Helix 19
19
A
404 408Right-handed alpha
Helix 20
20
A
417 427Right-handed alpha
Helix 21
21
B
37 58Right-handed alpha
Helix 22
22
B
71 79Right-handed alpha
Helix 23
23
B
85 96Right-handed alpha
Helix 24
24
B
113 122Right-handed alpha
Helix 25
25
B
143 146Right-handed 310
Helix 26
26
B
157 162Right-handed 310
Helix 27
27
B
169 182Right-handed alpha
Helix 28
28
B
190 192Right-handed 310
Helix 29
29
B
203 220Right-handed alpha
Helix 30
30
B
237 253Right-handed alpha
Helix 31
31
B
260 271Right-handed alpha
Helix 32
32
B
271 285Right-handed alpha
Helix 33
33
B
295 305Right-handed alpha
Helix 34
34
B
306 309Right-handed 310
Helix 35
35
B
315 330Right-handed alpha
Helix 36
36
B
331 336Right-handed 310
Helix 37
37
B
366 380Right-handed alpha
Helix 38
38
B
382 399Right-handed alpha
Helix 39
39
B
403 408Right-handed alpha
Helix 40
40
B
417 427Right-handed alpha
Helix 41
41
C
37 58Right-handed alpha
Helix 42
42
C
71 79Right-handed alpha
Helix 43
43
C
85 96Right-handed alpha
Helix 44
44
C
113 122Right-handed alpha
Helix 45
45
C
143 146Right-handed 310
Helix 46
46
C
157 162Right-handed 310
Helix 47
47
C
169 182Right-handed alpha
Helix 48
48
C
190 192Right-handed 310
Helix 49
49
C
203 220Right-handed alpha
Helix 50
50
C
237 253Right-handed alpha
Helix 51
51
C
260 271Right-handed alpha
Helix 52
52
C
271 285Right-handed alpha
Helix 53
53
C
295 305Right-handed alpha
Helix 54
54
C
306 309Right-handed 310
Helix 55
55
C
315 330Right-handed alpha
Helix 56
56
C
331 336Right-handed 310
Helix 57
57
C
366 381Right-handed alpha
Helix 58
58
C
382 399Right-handed alpha
Helix 59
59
C
404 408Right-handed alpha
Helix 60
60
C
417 427Right-handed alpha
Helix 61
61
D
37 58Right-handed alpha
Helix 62
62
D
71 79Right-handed alpha
Helix 63
63
D
85 96Right-handed alpha
Helix 64
64
D
113 122Right-handed alpha
Helix 65
65
D
143 146Right-handed 310
Helix 66
66
D
157 162Right-handed 310
Helix 67
67
D
169 182Right-handed alpha
Helix 68
68
D
190 192Right-handed 310
Helix 69
69
D
203 220Right-handed alpha
Helix 70
70
D
237 253Right-handed alpha
Helix 71
71
D
260 271Right-handed alpha
Helix 72
72
D
271 285Right-handed alpha
Helix 73
73
D
295 305Right-handed alpha
Helix 74
74
D
306 309Right-handed 310
Helix 75
75
D
315 330Right-handed alpha
Helix 76
76
D
331 336Right-handed 310
Helix 77
77
D
366 380Right-handed alpha
Helix 78
78
D
382 399Right-handed alpha
Helix 79
79
D
404 408Right-handed alpha
Helix 80
80
D
417 427Right-handed alpha
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There are 13 sheets in PDB entry 2D4V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
20 22anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
28 32parallel
Strand 3
A
97 100parallel
Strand 4
A
346 349parallel
Strand 5
A
339 341anti-parallel
Strand 6
A
126 132anti-parallel
Strand 7
A
148 154anti-parallel
Strand 8
A
311 314parallel
Strand 9
A
224 229parallel
Strand 10
A
288 294parallel
Strand 11
A
257 259parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
194 202anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
164 165anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
415 416parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
20 22anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
28 32parallel
Strand 3
B
97 100parallel
Strand 4
B
346 349parallel
Strand 5
B
339 341anti-parallel
Strand 6
B
126 132anti-parallel
Strand 7
B
148 154anti-parallel
Strand 8
B
311 314parallel
Strand 9
B
224 229parallel
Strand 10
B
288 294parallel
Strand 11
B
257 259parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
20 22anti-parallel
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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 67first strand
Strand 2
C
28 32parallel
Strand 3
C
97 100parallel
Strand 4
C
346 349parallel
Strand 5
C
339 341anti-parallel
Strand 6
C
126 132anti-parallel
Strand 7
C
148 154anti-parallel
Strand 8
C
311 314parallel
Strand 9
C
224 229parallel
Strand 10
C
288 294parallel
Strand 11
C
257 259parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 165first strand
Strand 2
C
194 202anti-parallel
Strand 3
D
194 202anti-parallel
Strand 4
D
164 165anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 403first strand
Strand 2
C
415 416parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
20 22anti-parallel
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There are 11 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 67first strand
Strand 2
D
28 32parallel
Strand 3
D
97 100parallel
Strand 4
D
346 349parallel
Strand 5
D
339 341anti-parallel
Strand 6
D
126 132anti-parallel
Strand 7
D
148 154anti-parallel
Strand 8
D
311 314parallel
Strand 9
D
224 229parallel
Strand 10
D
288 294parallel
Strand 11
D
257 259parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
402 403first strand
Strand 2
D
415 416parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il