Analysis of interatomic Contacts of Structural Units in PDB entry:
2D52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D52 entry

There are 4 chains in PDB entry 2D52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLY 176
A
 TYR 178LEU 405
B
 LEU 11GLY 176
B
 TYR 178LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 2D52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
A
48 57Right-handed alpha
Helix 3
3
A
62 76Right-handed alpha
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
103 131Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
152 162Right-handed alpha
Helix 8
8
A
175 177Right-handed 310
Helix 9
9
A
178 193Right-handed alpha
Helix 10
10
A
206 210Right-handed 310
Helix 11
11
A
218 226Right-handed alpha
Helix 12
12
A
283 302Right-handed alpha
Helix 13
13
A
310 314Right-handed 310
Helix 14
14
A
322 333Right-handed alpha
Helix 15
15
A
340 351Right-handed alpha
Helix 16
16
A
353 355Right-handed 310
Helix 17
17
A
356 372Right-handed alpha
Helix 18
18
B
13 15Right-handed 310
Helix 19
19
B
16 25Right-handed alpha
Helix 20
20
B
48 57Right-handed alpha
Helix 21
21
B
62 76Right-handed alpha
Helix 22
22
B
86 91Right-handed alpha
Helix 23
23
B
103 131Right-handed alpha
Helix 24
24
B
133 137Right-handed 310
Helix 25
25
B
152 162Right-handed alpha
Helix 26
26
B
175 177Right-handed 310
Helix 27
27
B
178 193Right-handed alpha
Helix 28
28
B
206 210Right-handed 310
Helix 29
29
B
218 228Right-handed alpha
Helix 30
30
B
283 302Right-handed alpha
Helix 31
31
B
310 314Right-handed 310
Helix 32
32
B
322 333Right-handed alpha
Helix 33
33
B
336 339Right-handed 310
Helix 34
34
B
340 351Right-handed alpha
Helix 35
35
B
353 355Right-handed 310
Helix 36
36
B
356 372Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2D52. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
139 144parallel
Strand 3
A
198 205parallel
Strand 4
A
231 238anti-parallel
Strand 5
A
31 38anti-parallel
Strand 6
A
250 259anti-parallel
Strand 7
A
394 402anti-parallel
Strand 8
A
383 390anti-parallel
Strand 9
A
315 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
80 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
B
267 272anti-parallel
Strand 3
B
275 280anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 280first strand
Strand 2
A
267 272anti-parallel
Strand 3
B
149 150anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
139 144parallel
Strand 3
B
198 205parallel
Strand 4
B
231 238anti-parallel
Strand 5
B
31 38anti-parallel
Strand 6
B
250 259anti-parallel
Strand 7
B
394 402anti-parallel
Strand 8
B
383 390anti-parallel
Strand 9
B
315 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
80 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il