Analysis of interatomic Contacts of Structural Units in PDB entry:
2D5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D5G entry

There are 6 chains in PDB entry 2D5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 750ASP 832
B
 PRO 748ASP 832
C
 CYS 750ASP 832
D
 CYS 750ASP 832
E
 ILE 753ASP 832
F
 CYS 750ASP 832
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 2D5G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
776 782Right-handed alpha
Helix 2
2
B
776 782Right-handed alpha
Helix 3
3
C
776 782Right-handed alpha
Helix 4
4
D
776 782Right-handed alpha
Helix 5
5
E
776 782Right-handed alpha
Helix 6
6
F
776 782Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2D5G.

There are 30 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
766 771first strand
Strand 2
B
752 759anti-parallel
Strand 3
B
823 830parallel
Strand 4
B
790 797anti-parallel
Strand 5
B
805 809anti-parallel
Strand 6
A
766 771parallel
Strand 7
A
752 759anti-parallel
Strand 8
A
823 830parallel
Strand 9
A
790 797anti-parallel
Strand 10
A
805 809anti-parallel
Strand 11
C
766 771parallel
Strand 12
C
752 759anti-parallel
Strand 13
C
823 830parallel
Strand 14
C
790 797anti-parallel
Strand 15
C
805 810anti-parallel
Strand 16
D
766 770parallel
Strand 17
D
753 759anti-parallel
Strand 18
D
823 830parallel
Strand 19
D
790 798anti-parallel
Strand 20
D
801 810anti-parallel
Strand 21
E
766 769parallel
Strand 22
E
754 759anti-parallel
Strand 23
E
823 830parallel
Strand 24
E
790 797anti-parallel
Strand 25
E
805 810anti-parallel
Strand 26
F
766 771parallel
Strand 27
F
752 759anti-parallel
Strand 28
F
823 830parallel
Strand 29
F
790 797anti-parallel
Strand 30
F
805 809anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il