Analysis of interatomic Contacts of Structural Units in PDB entry:
2D5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D5L entry

There is 1 chain in PDB entry 2D5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 45LEU 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2D5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
88 94Right-handed alpha
Helix 2
2
A
201 205Right-handed 310
Helix 3
3
A
536 543Right-handed alpha
Helix 4
4
A
560 566Right-handed alpha
Helix 5
5
A
572 588Right-handed alpha
Helix 6
6
A
603 616Right-handed alpha
Helix 7
7
A
631 635Right-handed 310
Helix 8
8
A
636 645Right-handed alpha
Helix 9
9
A
646 649Right-handed 310
Helix 10
10
A
650 658Right-handed alpha
Helix 11
11
A
659 666Right-handed 310
Helix 12
12
A
683 697Right-handed alpha
Helix 13
13
A
715 732Right-handed alpha
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There are 11 sheets in PDB entry 2D5L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
71 75anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
120 125anti-parallel
Strand 3
A
128 133anti-parallel
Strand 4
A
138 143anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
168 173anti-parallel
Strand 4
A
185 186anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
212 214anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
260 267anti-parallel
Strand 4
A
272 275anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
245 249anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 291first strand
Strand 2
A
297 303anti-parallel
Strand 3
A
309 316anti-parallel
Strand 4
A
322 330anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
350 355anti-parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
372 375anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 389first strand
Strand 2
A
395 400anti-parallel
Strand 3
A
409 414anti-parallel
Strand 4
A
420 422anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 434first strand
Strand 2
A
440 446anti-parallel
Strand 3
A
452 458anti-parallel
Strand 4
A
463 469anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 487first strand
Strand 2
A
494 500anti-parallel
Strand 3
A
547 551anti-parallel
Strand 4
A
511 516parallel
Strand 5
A
592 602parallel
Strand 6
A
620 626parallel
Strand 7
A
669 675parallel
Strand 8
A
701 705parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il