Analysis of interatomic Contacts of Structural Units in PDB entry:
2D5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D5V entry

There are 6 chains in PDB entry 2D5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 1001 T 1014
D
 A 1015 G 1027
E
 T 2001 T 2014
F
 A 2015 A 2026
A
 MET 1LYS 155
B
 MET 1LYS 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 2D5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 20Right-handed alpha
Helix 2
2
A
23 31Right-handed alpha
Helix 3
3
A
35 45Right-handed alpha
Helix 4
4
A
48 52Right-handed 310
Helix 5
5
A
53 54Right-handed 310
Helix 6
6
A
55 68Right-handed alpha
Helix 7
7
A
69 77Right-handed alpha
Helix 8
8
A
105 119Right-handed alpha
Helix 9
9
A
123 135Right-handed alpha
Helix 10
10
A
137 151Right-handed alpha
Helix 11
11
B
5 20Right-handed alpha
Helix 12
12
B
23 31Right-handed alpha
Helix 13
13
B
35 45Right-handed alpha
Helix 14
14
B
48 52Right-handed 310
Helix 15
15
B
53 54Right-handed 310
Helix 16
16
B
55 68Right-handed alpha
Helix 17
17
B
69 77Right-handed alpha
Helix 18
18
B
105 119Right-handed alpha
Helix 19
19
B
123 135Right-handed alpha
Helix 20
20
B
137 153Right-handed alpha
Back to top of page
There are no sheets in PDB entry 2D5V
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il