Analysis of interatomic Contacts of Structural Units in PDB entry:
2D62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D62 entry

There is 1 chain in PDB entry 2D62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2D62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 54Right-handed alpha
Helix 2
2
A
73 76Right-handed 310
Helix 3
3
A
80 85Right-handed alpha
Helix 4
4
A
100 111Right-handed alpha
Helix 5
5
A
115 130Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
139 143Right-handed 310
Helix 8
8
A
144 158Right-handed alpha
Helix 9
9
A
174 193Right-handed alpha
Helix 10
10
A
202 210Right-handed alpha
Helix 11
11
A
226 233Right-handed alpha
Helix 12
12
A
236 243Right-handed alpha
Helix 13
13
A
271 281Right-handed alpha
Helix 14
14
A
293 295Right-handed 310
Helix 15
15
A
301 303Right-handed 310
Helix 16
16
A
360 363Right-handed 310
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There are 4 sheets in PDB entry 2D62. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 29first strand
Strand 2
A
7 16anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
68 72anti-parallel
Strand 5
A
77 78anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
163 167parallel
Strand 3
A
195 200parallel
Strand 4
A
34 38parallel
Strand 5
A
212 217parallel
Strand 6
A
220 225anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
260 262anti-parallel
Strand 3
A
249 255anti-parallel
Strand 4
A
287 292anti-parallel
Strand 5
A
364 367anti-parallel
Strand 6
A
373 375anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
312 322anti-parallel
Strand 4
A
326 333anti-parallel
Strand 5
A
336 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il