Analysis of interatomic Contacts of Structural Units in PDB entry:
2D7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D7D entry

There are 3 chains in PDB entry 2D7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 T 1 T 3
A
 ASP 3LEU 654
B
 LYS 622ALA 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2D7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
44 57Right-handed alpha
Helix 3
3
A
66 81Right-handed alpha
Helix 4
4
A
116 133Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
150 158Right-handed alpha
Helix 7
7
A
168 179Right-handed alpha
Helix 8
8
A
252 277Right-handed alpha
Helix 9
9
A
279 301Right-handed alpha
Helix 10
10
A
305 308Right-handed 310
Helix 11
11
A
309 314Right-handed alpha
Helix 12
12
A
324 329Right-handed 310
Helix 13
13
A
339 364Right-handed alpha
Helix 14
14
A
368 374Right-handed 310
Helix 15
15
A
378 385Right-handed alpha
Helix 16
16
A
397 404Right-handed alpha
Helix 17
17
A
429 443Right-handed alpha
Helix 18
18
A
454 468Right-handed alpha
Helix 19
19
A
480 493Right-handed alpha
Helix 20
20
A
530 540Right-handed alpha
Helix 21
21
A
557 582Right-handed alpha
Helix 22
22
A
621 641Right-handed alpha
Helix 23
23
A
643 654Right-handed alpha
Helix 24
24
B
622 641Right-handed alpha
Helix 25
25
B
643 659Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2D7D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
136 140parallel
Strand 3
A
60 63parallel
Strand 4
A
334 338parallel
Strand 5
A
388 392parallel
Strand 6
A
34 39parallel
Strand 7
A
408 410parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
112 115anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
192 196parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
210 216anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
234 237anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 425first strand
Strand 2
A
548 552parallel
Strand 3
A
514 519parallel
Strand 4
A
447 451parallel
Strand 5
A
498 501parallel
Strand 6
A
472 475parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il