Analysis of interatomic Contacts of Structural Units in PDB entry:
2D7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D7J entry

There is 1 chain in PDB entry 2D7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2LEU 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2D7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
35 41Right-handed alpha
Helix 3
3
A
60 67Right-handed alpha
Helix 4
4
A
68 71Right-handed 310
Helix 5
5
A
79 89Right-handed alpha
Helix 6
6
A
174 188Right-handed alpha
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There are 2 sheets in PDB entry 2D7J. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
3 7parallel
Strand 3
A
46 49parallel
Strand 4
A
75 78parallel
Strand 5
A
160 163parallel
Strand 6
A
152 155anti-parallel
Strand 7
A
139 144anti-parallel
Strand 8
A
102 108anti-parallel
Strand 9
A
121 126anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
130 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il