Analysis of interatomic Contacts of Structural Units in PDB entry:
2D7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D7R entry

There is 1 chain in PDB entry 2D7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 68ASN 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2D7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 85Right-handed alpha
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
104 108Right-handed 310
Helix 4
4
A
114 120Right-handed alpha
Helix 5
5
A
134 138Right-handed 310
Helix 6
6
A
157 172Right-handed alpha
Helix 7
7
A
173 175Right-handed 310
Helix 8
8
A
189 192Right-handed 310
Helix 9
9
A
193 202Right-handed alpha
Helix 10
10
A
216 228Right-handed alpha
Helix 11
11
A
247 257Right-handed alpha
Helix 12
12
A
326 332Right-handed alpha
Helix 13
13
A
344 356Right-handed alpha
Helix 14
14
A
385 398Right-handed alpha
Helix 15
15
A
399 401Right-handed 310
Helix 16
16
A
402 407Right-handed alpha
Helix 17
17
A
409 413Right-handed 310
Helix 18
18
A
420 429Right-handed alpha
Helix 19
19
A
434 442Right-handed alpha
Helix 20
20
A
445 450Right-handed alpha
Helix 21
21
A
593 598Right-handed alpha
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There are 10 sheets in PDB entry 2D7R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
177 184parallel
Strand 3
A
147 153parallel
Strand 4
A
232 235parallel
Strand 5
A
322 325anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
359 370anti-parallel
Strand 3
A
260 269parallel
Strand 4
A
276 277anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
359 370anti-parallel
Strand 3
A
312 313anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
294 297anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 513first strand
Strand 2
A
503 506anti-parallel
Strand 3
A
459 461anti-parallel
Strand 4
A
591 592anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
587 588anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 472first strand
Strand 2
A
485 486anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
534 537anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 550first strand
Strand 2
A
554 556anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 566first strand
Strand 2
A
573 576anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il