Analysis of interatomic Contacts of Structural Units in PDB entry:
2D7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D7S entry

There are 2 chains in PDB entry 2D7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLU 474
B
 GLY 1001VAL 1015
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 2D7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 31Right-handed alpha
Helix 2
2
A
51 57Right-handed alpha
Helix 3
3
A
67 90Right-handed alpha
Helix 4
4
A
99 104Right-handed alpha
Helix 5
5
A
140 152Right-handed alpha
Helix 6
6
A
170 176Right-handed alpha
Helix 7
7
A
185 206Right-handed alpha
Helix 8
8
A
218 230Right-handed alpha
Helix 9
9
A
249 261Right-handed alpha
Helix 10
10
A
262 266Right-handed 310
Helix 11
11
A
270 277Right-handed alpha
Helix 12
12
A
302 321Right-handed alpha
Helix 13
13
A
327 331Right-handed 310
Helix 14
14
A
349 352Right-handed 310
Helix 15
15
A
353 359Right-handed alpha
Helix 16
16
A
369 373Right-handed 310
Helix 17
17
A
404 414Right-handed alpha
Helix 18
18
A
419 432Right-handed alpha
Helix 19
19
A
434 444Right-handed alpha
Helix 20
20
A
445 447Right-handed 310
Helix 21
21
A
454 467Right-handed alpha
Helix 22
22
A
467 473Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2D7S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
159 163parallel
Strand 5
A
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
167 169anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
332 336anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
388 392anti-parallel
Strand 3
A
399 402anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il