Analysis of interatomic Contacts of Structural Units in PDB entry:
2D80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D80 entry

There is 1 chain in PDB entry 2D80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21GLN 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2D80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 52Right-handed alpha
Helix 2
2
A
75 80Right-handed 310
Helix 3
3
A
87 98Right-handed alpha
Helix 4
4
A
104 111Right-handed 310
Helix 5
5
A
125 137Right-handed alpha
Helix 6
6
A
141 143Right-handed 310
Helix 7
7
A
183 194Right-handed alpha
Helix 8
8
A
214 218Right-handed 310
Helix 9
9
A
231 236Right-handed alpha
Helix 10
10
A
253 258Right-handed alpha
Helix 11
11
A
259 265Right-handed alpha
Helix 12
12
A
266 272Right-handed alpha
Helix 13
13
A
320 335Right-handed alpha
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There are 3 sheets in PDB entry 2D80. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
112 118parallel
Strand 3
A
59 63parallel
Strand 4
A
28 38parallel
Strand 5
A
241 247parallel
Strand 6
A
276 280parallel
Strand 7
A
225 230anti-parallel
Strand 8
A
207 212anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
177 179parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 291first strand
Strand 2
A
297 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il