Analysis of interatomic Contacts of Structural Units in PDB entry:
2D8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2D8A entry

There is 1 chain in PDB entry 2D8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LEU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2D8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 51Right-handed alpha
Helix 2
2
A
54 59Right-handed alpha
Helix 3
3
A
144 149Right-handed alpha
Helix 4
4
A
150 162Right-handed alpha
Helix 5
5
A
177 190Right-handed alpha
Helix 6
6
A
201 212Right-handed alpha
Helix 7
7
A
223 232Right-handed alpha
Helix 8
8
A
246 256Right-handed alpha
Helix 9
9
A
276 281Right-handed alpha
Helix 10
10
A
296 310Right-handed alpha
Helix 11
11
A
327 337Right-handed alpha
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There are 5 sheets in PDB entry 2D8A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
63 64anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
88 91anti-parallel
Strand 5
A
136 138anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
342 346anti-parallel
Strand 4
A
318 323parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
115 116anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
195 198parallel
Strand 3
A
171 174parallel
Strand 4
A
237 242parallel
Strand 5
A
257 265parallel
Strand 6
A
287 290parallel
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