Analysis of interatomic Contacts of Structural Units in PDB entry:
2DAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DAP entry

There is 1 chain in PDB entry 2DAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2DAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
49 55Right-handed 310
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
95 109Right-handed alpha
Helix 5
5
A
123 134Right-handed alpha
Helix 6
6
A
150 158Right-handed alpha
Helix 7
7
A
173 181Right-handed alpha
Helix 8
8
A
206 214Right-handed alpha
Helix 9
9
A
232 238Right-handed alpha
Helix 10
10
A
270 290Right-handed alpha
Helix 11
11
A
299 301Right-handed 310
Helix 12
12
A
304 307Right-handed 310
Helix 13
13
A
312 318Right-handed alpha
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There are 4 sheets in PDB entry 2DAP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
61 64parallel
Strand 3
A
4 9parallel
Strand 4
A
28 35parallel
Strand 5
A
46 48parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
295 297parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 144first strand
Strand 2
A
244 253anti-parallel
Strand 3
A
258 267anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 171first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
224 229parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il