Analysis of interatomic Contacts of Structural Units in PDB entry:
2DB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DB4 entry

There are 10 chains in PDB entry 2DB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 156
B
 MET 1ALA 156
C
 MET 1ALA 156
D
 MET 1ALA 156
E
 MET 1ALA 156
F
 MET 1ALA 156
G
 MET 1ALA 156
H
 MET 1ALA 156
I
 MET 1ALA 156
J
 MET 1ALA 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 2DB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 8Right-handed alpha
Helix 2
2
A
11 46Right-handed alpha
Helix 3
3
A
48 50Right-handed 310
Helix 4
4
A
51 61Right-handed alpha
Helix 5
5
A
63 78Right-handed alpha
Helix 6
6
A
85 124Right-handed alpha
Helix 7
7
A
127 137Right-handed alpha
Helix 8
9
B
1 8Right-handed alpha
Helix 9
10
B
11 46Right-handed alpha
Helix 10
11
B
48 50Right-handed 310
Helix 11
12
B
51 61Right-handed alpha
Helix 12
13
B
63 78Right-handed alpha
Helix 13
14
B
85 124Right-handed alpha
Helix 14
15
B
127 137Right-handed alpha
Helix 15
17
C
1 8Right-handed alpha
Helix 16
18
C
11 46Right-handed alpha
Helix 17
19
C
48 50Right-handed 310
Helix 18
20
C
51 61Right-handed alpha
Helix 19
21
C
63 78Right-handed alpha
Helix 20
22
C
85 124Right-handed alpha
Helix 21
23
C
127 137Right-handed alpha
Helix 22
25
D
1 8Right-handed alpha
Helix 23
26
D
11 46Right-handed alpha
Helix 24
27
D
48 50Right-handed 310
Helix 25
28
D
51 61Right-handed alpha
Helix 26
29
D
63 78Right-handed alpha
Helix 27
30
D
85 124Right-handed alpha
Helix 28
31
D
127 137Right-handed alpha
Helix 29
33
E
1 8Right-handed alpha
Helix 30
34
E
11 46Right-handed alpha
Helix 31
35
E
48 50Right-handed 310
Helix 32
36
E
51 61Right-handed alpha
Helix 33
37
E
63 78Right-handed alpha
Helix 34
38
E
85 124Right-handed alpha
Helix 35
39
E
127 137Right-handed alpha
Helix 36
41
F
1 8Right-handed alpha
Helix 37
42
F
11 46Right-handed alpha
Helix 38
43
F
48 50Right-handed 310
Helix 39
44
F
51 61Right-handed alpha
Helix 40
45
F
63 78Right-handed alpha
Helix 41
46
F
85 124Right-handed alpha
Helix 42
47
F
127 137Right-handed alpha
Helix 43
49
G
1 8Right-handed alpha
Helix 44
50
G
11 46Right-handed alpha
Helix 45
51
G
48 50Right-handed 310
Helix 46
52
G
51 61Right-handed alpha
Helix 47
53
G
63 78Right-handed alpha
Helix 48
54
G
85 124Right-handed alpha
Helix 49
55
G
127 137Right-handed alpha
Helix 50
57
H
1 8Right-handed alpha
Helix 51
58
H
11 46Right-handed alpha
Helix 52
59
H
48 50Right-handed 310
Helix 53
60
H
51 61Right-handed alpha
Helix 54
61
H
63 78Right-handed alpha
Helix 55
62
H
85 124Right-handed alpha
Helix 56
63
H
127 137Right-handed alpha
Helix 57
65
I
1 8Right-handed alpha
Helix 58
66
I
11 46Right-handed alpha
Helix 59
67
I
47 50Right-handed 310
Helix 60
68
I
51 61Right-handed alpha
Helix 61
69
I
63 78Right-handed alpha
Helix 62
70
I
85 124Right-handed alpha
Helix 63
71
I
127 137Right-handed alpha
Helix 64
73
J
1 8Right-handed alpha
Helix 65
74
J
11 46Right-handed alpha
Helix 66
75
J
48 50Right-handed 310
Helix 67
76
J
51 61Right-handed alpha
Helix 68
77
J
63 78Right-handed alpha
Helix 69
78
J
85 124Right-handed alpha
Helix 70
79
J
127 137Right-handed alpha
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There are no sheets in PDB entry 2DB4
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