Analysis of interatomic Contacts of Structural Units in PDB entry:
2DBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DBV entry

There are 4 chains in PDB entry 2DBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ALA 0LEU 333
P
 ALA 0LEU 333
Q
 ALA 0LEU 333
R
 ALA 0LEU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2DBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
BO
O
10 18Right-handed alpha
Helix 2
CO
O
36 45Right-handed alpha
Helix 3
DO
O
84 87Right-handed alpha
Helix 4
EO
O
102 110Right-handed alpha
Helix 5
1O
O
148 164Right-handed alpha
Helix 6
2O
O
210 215Right-handed alpha
Helix 7
3O
O
251 264Right-handed alpha
Helix 8
4O
O
313 330Right-handed alpha
Helix 9
BP
P
10 18Right-handed alpha
Helix 10
CP
P
36 45Right-handed alpha
Helix 11
DP
P
84 87Right-handed alpha
Helix 12
EP
P
102 110Right-handed alpha
Helix 13
1P
P
148 164Right-handed alpha
Helix 14
2P
P
210 215Right-handed alpha
Helix 15
3P
P
251 264Right-handed alpha
Helix 16
4P
P
313 330Right-handed alpha
Helix 17
BQ
Q
10 18Right-handed alpha
Helix 18
CQ
Q
36 45Right-handed alpha
Helix 19
DQ
Q
84 87Right-handed alpha
Helix 20
EQ
Q
102 110Right-handed alpha
Helix 21
1Q
Q
148 164Right-handed alpha
Helix 22
2Q
Q
210 215Right-handed alpha
Helix 23
3Q
Q
251 264Right-handed alpha
Helix 24
4Q
Q
313 330Right-handed alpha
Helix 25
BR
R
10 18Right-handed alpha
Helix 26
CR
R
36 45Right-handed alpha
Helix 27
DR
R
84 87Right-handed alpha
Helix 28
ER
R
102 110Right-handed alpha
Helix 29
1R
R
148 164Right-handed alpha
Helix 30
2R
R
210 215Right-handed alpha
Helix 31
3R
R
251 264Right-handed alpha
Helix 32
4R
R
313 330Right-handed alpha
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There are 8 sheets in PDB entry 2DBV. Click on sheet of interest to get list of strands forming it: BO, CO, BP, CP, BQ, CQ, BR, CR,

There are 9 strands in BO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
56 60first strand
Strand 2
O
63 66anti-parallel
Strand 3
O
71 74anti-parallel
Strand 4
O
29 32parallel
Strand 5
O
2 7parallel
Strand 6
O
90 94parallel
Strand 7
O
115 118parallel
Strand 8
O
144 147parallel
Strand 9
O
126 129parallel
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There are 7 strands in CO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
204 207first strand
Strand 2
O
225 233anti-parallel
Strand 3
O
170 178parallel
Strand 4
O
238 246anti-parallel
Strand 5
O
305 312anti-parallel
Strand 6
O
290 301anti-parallel
Strand 7
O
272 275parallel
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There are 9 strands in BP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
56 60first strand
Strand 2
P
63 66anti-parallel
Strand 3
P
71 74anti-parallel
Strand 4
P
29 32parallel
Strand 5
P
2 7parallel
Strand 6
P
90 94parallel
Strand 7
P
115 118parallel
Strand 8
P
144 147parallel
Strand 9
P
126 129parallel
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There are 7 strands in CP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
204 207first strand
Strand 2
P
225 233anti-parallel
Strand 3
P
170 178parallel
Strand 4
P
238 246anti-parallel
Strand 5
P
305 312anti-parallel
Strand 6
P
290 301anti-parallel
Strand 7
P
272 275parallel
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There are 9 strands in BQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
56 60first strand
Strand 2
Q
63 66anti-parallel
Strand 3
Q
71 74anti-parallel
Strand 4
Q
29 32parallel
Strand 5
Q
2 7parallel
Strand 6
Q
90 94parallel
Strand 7
Q
115 118parallel
Strand 8
Q
144 147parallel
Strand 9
Q
126 129parallel
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There are 7 strands in CQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
204 207first strand
Strand 2
Q
225 233anti-parallel
Strand 3
Q
170 178parallel
Strand 4
Q
238 246anti-parallel
Strand 5
Q
305 312anti-parallel
Strand 6
Q
290 301anti-parallel
Strand 7
Q
272 275parallel
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There are 9 strands in BR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
56 60first strand
Strand 2
R
63 66anti-parallel
Strand 3
R
71 74anti-parallel
Strand 4
R
29 32parallel
Strand 5
R
2 7parallel
Strand 6
R
90 94parallel
Strand 7
R
115 118parallel
Strand 8
R
144 147parallel
Strand 9
R
126 129parallel
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There are 7 strands in CR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
204 207first strand
Strand 2
R
225 233anti-parallel
Strand 3
R
170 178parallel
Strand 4
R
238 246anti-parallel
Strand 5
R
305 312anti-parallel
Strand 6
R
290 301anti-parallel
Strand 7
R
272 275parallel
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