Analysis of interatomic Contacts of Structural Units in PDB entry:
2DBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DBY entry

There is 1 chain in PDB entry 2DBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2DBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
32 37Right-handed 310
Helix 3
3
A
47 58Right-handed alpha
Helix 4
4
A
90 99Right-handed alpha
Helix 5
5
A
123 157Right-handed alpha
Helix 6
6
A
160 176Right-handed alpha
Helix 7
7
A
179 183Right-handed 310
Helix 8
8
A
186 196Right-handed alpha
Helix 9
9
A
198 202Right-handed 310
Helix 10
10
A
211 215Right-handed 310
Helix 11
11
A
221 235Right-handed alpha
Helix 12
12
A
242 251Right-handed alpha
Helix 13
13
A
253 264Right-handed alpha
Helix 14
14
A
269 282Right-handed alpha
Helix 15
15
A
305 314Right-handed alpha
Helix 16
16
A
315 319Right-handed 310
Helix 17
17
A
329 336Right-handed alpha
Helix 18
18
A
337 344Right-handed alpha
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There are 3 sheets in PDB entry 2DBY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
3 7parallel
Strand 4
A
102 108parallel
Strand 5
A
204 209parallel
Strand 6
A
237 241parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
295 301parallel
Strand 3
A
284 290anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
360 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il