Analysis of interatomic Contacts of Structural Units in PDB entry:
2DBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DBZ entry

There are 2 chains in PDB entry 2DBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 333
B
 MET 1PHE 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2DBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
35 43Right-handed alpha
Helix 3
3
A
58 64Right-handed alpha
Helix 4
4
A
82 89Right-handed alpha
Helix 5
5
A
100 118Right-handed alpha
Helix 6
6
A
118 128Right-handed alpha
Helix 7
7
A
129 135Right-handed alpha
Helix 8
8
A
159 172Right-handed alpha
Helix 9
9
A
184 192Right-handed alpha
Helix 10
10
A
197 205Right-handed alpha
Helix 11
11
A
223 230Right-handed alpha
Helix 12
12
A
241 245Right-handed 310
Helix 13
13
A
246 257Right-handed alpha
Helix 14
14
A
274 280Right-handed alpha
Helix 15
15
A
293 313Right-handed alpha
Helix 16
16
A
324 329Right-handed alpha
Helix 17
17
B
12 21Right-handed alpha
Helix 18
18
B
35 43Right-handed alpha
Helix 19
19
B
58 64Right-handed alpha
Helix 20
20
B
82 89Right-handed alpha
Helix 21
21
B
100 118Right-handed alpha
Helix 22
22
B
118 128Right-handed alpha
Helix 23
23
B
129 134Right-handed alpha
Helix 24
24
B
159 171Right-handed alpha
Helix 25
25
B
184 192Right-handed alpha
Helix 26
26
B
197 205Right-handed alpha
Helix 27
27
B
225 230Right-handed alpha
Helix 28
28
B
241 245Right-handed 310
Helix 29
29
B
246 256Right-handed alpha
Helix 30
30
B
274 280Right-handed alpha
Helix 31
31
B
293 313Right-handed alpha
Helix 32
32
B
324 329Right-handed alpha
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There are 4 sheets in PDB entry 2DBZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
4 7parallel
Strand 3
A
48 51parallel
Strand 4
A
70 73parallel
Strand 5
A
92 94parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
175 179parallel
Strand 3
A
152 156parallel
Strand 4
A
207 210parallel
Strand 5
A
235 238parallel
Strand 6
A
261 264parallel
Strand 7
A
283 285parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
4 7parallel
Strand 3
B
48 51parallel
Strand 4
B
70 73parallel
Strand 5
B
92 94parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
175 179parallel
Strand 3
B
152 156parallel
Strand 4
B
207 210parallel
Strand 5
B
235 238parallel
Strand 6
B
261 264parallel
Strand 7
B
283 285parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il