Analysis of interatomic Contacts of Structural Units in PDB entry:
2DC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DC0 entry

There are 2 chains in PDB entry 2DC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 434
B
 MET 1001GLY 1434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2DC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
16 31Right-handed alpha
Helix 3
3
A
32 35Right-handed 310
Helix 4
4
A
41 58Right-handed alpha
Helix 5
5
A
98 107Right-handed alpha
Helix 6
6
A
118 122Right-handed 310
Helix 7
7
A
148 158Right-handed alpha
Helix 8
8
A
172 180Right-handed alpha
Helix 9
9
A
212 225Right-handed alpha
Helix 10
10
A
241 246Right-handed alpha
Helix 11
11
A
250 264Right-handed alpha
Helix 12
12
A
280 297Right-handed alpha
Helix 13
13
A
297 304Right-handed alpha
Helix 14
14
A
305 308Right-handed 310
Helix 15
15
A
309 322Right-handed alpha
Helix 16
16
A
323 346Right-handed alpha
Helix 17
17
A
377 383Right-handed alpha
Helix 18
18
A
385 391Right-handed alpha
Helix 19
19
A
418 431Right-handed alpha
Helix 20
20
B
1002 1012Right-handed alpha
Helix 21
21
B
1016 1031Right-handed alpha
Helix 22
22
B
1032 1035Right-handed 310
Helix 23
23
B
1041 1058Right-handed alpha
Helix 24
24
B
1098 1107Right-handed alpha
Helix 25
25
B
1118 1122Right-handed 310
Helix 26
26
B
1148 1158Right-handed alpha
Helix 27
27
B
1172 1180Right-handed alpha
Helix 28
28
B
1212 1225Right-handed alpha
Helix 29
29
B
1241 1246Right-handed alpha
Helix 30
30
B
1250 1264Right-handed alpha
Helix 31
31
B
1280 1297Right-handed alpha
Helix 32
32
B
1297 1304Right-handed alpha
Helix 33
33
B
1305 1308Right-handed 310
Helix 34
34
B
1309 1322Right-handed alpha
Helix 35
35
B
1323 1346Right-handed alpha
Helix 36
36
B
1377 1383Right-handed alpha
Helix 37
37
B
1385 1391Right-handed alpha
Helix 38
38
B
1418 1433Right-handed alpha
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There are 4 sheets in PDB entry 2DC0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
110 115anti-parallel
Strand 3
A
69 73parallel
Strand 4
A
163 166parallel
Strand 5
A
206 210anti-parallel
Strand 6
A
182 185anti-parallel
Strand 7
A
395 403anti-parallel
Strand 8
A
406 413anti-parallel
Strand 9
A
350 354anti-parallel
Strand 10
A
237 240parallel
Strand 11
A
270 273parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
373 376anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1037 1040first strand
Strand 2
B
1110 1115anti-parallel
Strand 3
B
1069 1073parallel
Strand 4
B
1163 1167parallel
Strand 5
B
1205 1210anti-parallel
Strand 6
B
1182 1185anti-parallel
Strand 7
B
1395 1403anti-parallel
Strand 8
B
1406 1413anti-parallel
Strand 9
B
1350 1354anti-parallel
Strand 10
B
1237 1240parallel
Strand 11
B
1270 1273parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1367 1370first strand
Strand 2
B
1373 1376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il