Analysis of interatomic Contacts of Structural Units in PDB entry:
2DD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DD5 entry

There are 20 chains in PDB entry 2DD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8ALA 126
B
 SER 3PRO 154
C
 GLU 23LEU 130
C
 SER 132SER 132
C
 TYR 134VAL 239
D
 PRO 8ALA 126
E
 SER 4PRO 154
F
 VAL 24LEU 130
F
 SER 132SER 132
F
 TYR 134VAL 239
G
 LYS 7ALA 126
H
 SER 2LYS 157
I
 GLU 23LEU 130
I
 SER 132SER 132
I
 TYR 134VAL 239
J
 LYS 7ALA 126
K
 SER 3PRO 154
L
 VAL 24LEU 130
L
 SER 132SER 132
L
 TYR 134VAL 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are109 helices in PDB entry 2DD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 20Right-handed alpha
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
57 61Right-handed 310
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
98 102Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
B
3 16Right-handed alpha
Helix 8
8
B
17 20Right-handed 310
Helix 9
9
B
31 35Right-handed 310
Helix 10
10
B
36 44Right-handed alpha
Helix 11
11
B
66 82Right-handed alpha
Helix 12
12
B
86 96Right-handed alpha
Helix 13
13
B
98 106Right-handed alpha
Helix 14
14
B
107 123Right-handed alpha
Helix 15
15
B
127 144Right-handed alpha
Helix 16
16
B
148 152Right-handed 310
Helix 17
17
C
25 41Right-handed alpha
Helix 18
18
C
45 59Right-handed alpha
Helix 19
19
C
61 74Right-handed alpha
Helix 20
20
C
74 84Right-handed alpha
Helix 21
21
C
84 91Right-handed alpha
Helix 22
22
C
135 140Right-handed alpha
Helix 23
23
C
144 147Right-handed 310
Helix 24
24
C
148 155Right-handed alpha
Helix 25
25
C
158 166Right-handed alpha
Helix 26
26
C
201 208Right-handed alpha
Helix 27
27
C
210 216Right-handed alpha
Helix 28
28
D
13 20Right-handed alpha
Helix 29
29
D
25 29Right-handed 310
Helix 30
30
D
57 61Right-handed 310
Helix 31
31
D
76 81Right-handed alpha
Helix 32
32
D
98 102Right-handed alpha
Helix 33
33
D
106 110Right-handed 310
Helix 34
34
E
4 16Right-handed alpha
Helix 35
35
E
17 20Right-handed 310
Helix 36
36
E
31 35Right-handed 310
Helix 37
37
E
36 44Right-handed alpha
Helix 38
38
E
66 82Right-handed alpha
Helix 39
39
E
86 96Right-handed alpha
Helix 40
40
E
98 106Right-handed alpha
Helix 41
41
E
107 123Right-handed alpha
Helix 42
42
E
127 144Right-handed alpha
Helix 43
43
E
148 152Right-handed 310
Helix 44
44
F
25 41Right-handed alpha
Helix 45
45
F
45 59Right-handed alpha
Helix 46
46
F
61 74Right-handed alpha
Helix 47
47
F
74 84Right-handed alpha
Helix 48
48
F
84 91Right-handed alpha
Helix 49
49
F
135 140Right-handed alpha
Helix 50
50
F
143 147Right-handed 310
Helix 51
51
F
148 155Right-handed alpha
Helix 52
52
F
158 166Right-handed alpha
Helix 53
53
F
201 208Right-handed alpha
Helix 54
54
F
210 216Right-handed alpha
Helix 55
55
G
13 20Right-handed alpha
Helix 56
56
G
25 29Right-handed 310
Helix 57
57
G
57 61Right-handed 310
Helix 58
58
G
76 81Right-handed alpha
Helix 59
59
G
98 102Right-handed alpha
Helix 60
60
G
106 110Right-handed 310
Helix 61
61
H
2 16Right-handed alpha
Helix 62
62
H
17 20Right-handed 310
Helix 63
63
H
31 35Right-handed 310
Helix 64
64
H
36 44Right-handed alpha
Helix 65
65
H
66 82Right-handed alpha
Helix 66
66
H
86 96Right-handed alpha
Helix 67
67
H
98 106Right-handed alpha
Helix 68
68
H
107 123Right-handed alpha
Helix 69
69
H
127 145Right-handed alpha
Helix 70
70
H
148 152Right-handed 310
Helix 71
71
I
25 41Right-handed alpha
Helix 72
72
I
45 59Right-handed alpha
Helix 73
73
I
61 74Right-handed alpha
Helix 74
74
I
74 84Right-handed alpha
Helix 75
75
I
84 90Right-handed alpha
Helix 76
76
I
91 93Right-handed 310
Helix 77
77
I
135 140Right-handed alpha
Helix 78
78
I
144 147Right-handed 310
Helix 79
79
I
148 155Right-handed alpha
Helix 80
80
I
158 166Right-handed alpha
Helix 81
81
I
201 208Right-handed alpha
Helix 82
82
I
210 216Right-handed alpha
Helix 83
83
J
13 20Right-handed alpha
Helix 84
84
J
25 29Right-handed 310
Helix 85
85
J
57 61Right-handed 310
Helix 86
86
J
76 81Right-handed alpha
Helix 87
87
J
98 102Right-handed alpha
Helix 88
88
J
106 110Right-handed 310
Helix 89
89
K
3 16Right-handed alpha
Helix 90
90
K
17 20Right-handed 310
Helix 91
91
K
31 35Right-handed 310
Helix 92
92
K
36 44Right-handed alpha
Helix 93
93
K
66 82Right-handed alpha
Helix 94
94
K
86 96Right-handed alpha
Helix 95
95
K
98 106Right-handed alpha
Helix 96
96
K
107 123Right-handed alpha
Helix 97
97
K
127 145Right-handed alpha
Helix 98
98
K
148 152Right-handed 310
Helix 99
99
L
25 41Right-handed alpha
Helix 100
100
L
45 59Right-handed alpha
Helix 101
101
L
61 74Right-handed alpha
Helix 102
102
L
74 84Right-handed alpha
Helix 103
103
L
84 91Right-handed alpha
Helix 104
104
L
135 140Right-handed alpha
Helix 105
105
L
144 147Right-handed 310
Helix 106
106
L
148 155Right-handed alpha
Helix 107
107
L
158 166Right-handed alpha
Helix 108
108
L
201 208Right-handed alpha
Helix 109
109
L
210 216Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 2DD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
42 45anti-parallel
Strand 3
A
64 74anti-parallel
Strand 4
A
89 97anti-parallel
Strand 5
A
113 119anti-parallel
Strand 6
C
175 180parallel
Strand 7
C
122 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
H
22 26anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
C
232 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 117first strand
Strand 2
C
185 190parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 125first strand
Strand 2
D
42 45anti-parallel
Strand 3
D
64 74anti-parallel
Strand 4
D
89 97anti-parallel
Strand 5
D
113 119anti-parallel
Strand 6
F
175 180parallel
Strand 7
F
122 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 26first strand
Strand 2
K
22 26anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 63first strand
Strand 2
F
232 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
113 117first strand
Strand 2
F
186 190parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
123 125first strand
Strand 2
G
42 45anti-parallel
Strand 3
G
64 74anti-parallel
Strand 4
G
89 97anti-parallel
Strand 5
G
113 119anti-parallel
Strand 6
I
175 180parallel
Strand 7
I
122 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 63first strand
Strand 2
I
232 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
112 117first strand
Strand 2
I
185 190parallel
Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
123 125first strand
Strand 2
J
42 45anti-parallel
Strand 3
J
64 74anti-parallel
Strand 4
J
89 97anti-parallel
Strand 5
J
113 119anti-parallel
Strand 6
L
175 180parallel
Strand 7
L
122 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
62 63first strand
Strand 2
L
232 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
112 117first strand
Strand 2
L
185 190parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il