Analysis of interatomic Contacts of Structural Units in PDB entry:
2DE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DE0 entry

There is 1 chain in PDB entry 2DE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 LEU 108GLU 572
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2DE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
109 139Right-handed alpha
Helix 2
2
X
141 173Right-handed alpha
Helix 3
3
X
175 200Right-handed alpha
Helix 4
4
X
203 207Right-handed 310
Helix 5
5
X
219 237Right-handed alpha
Helix 6
6
X
254 258Right-handed 310
Helix 7
7
X
281 286Right-handed 310
Helix 8
8
X
293 297Right-handed 310
Helix 9
9
X
312 320Right-handed alpha
Helix 10
10
X
322 336Right-handed alpha
Helix 11
11
X
339 354Right-handed alpha
Helix 12
12
X
378 395Right-handed alpha
Helix 13
13
X
410 421Right-handed alpha
Helix 14
14
X
436 442Right-handed 310
Helix 15
15
X
445 460Right-handed alpha
Helix 16
16
X
469 480Right-handed alpha
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There are 4 sheets in PDB entry 2DE0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
240 244first strand
Strand 2
X
209 213parallel
Strand 3
X
288 291parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
308 309first strand
Strand 2
X
564 565parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
425 427first strand
Strand 2
X
403 408parallel
Strand 3
X
359 364parallel
Strand 4
X
462 465parallel
Strand 5
X
490 492parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
550 554first strand
Strand 2
X
539 544anti-parallel
Strand 3
X
528 534anti-parallel
Strand 4
X
506 509anti-parallel
Strand 5
X
558 560anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il