Analysis of interatomic Contacts of Structural Units in PDB entry:
2DE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DE2 entry

There is 1 chain in PDB entry 2DE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19ARG 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2DE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 40Right-handed alpha
Helix 2
2
A
40 45Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
74 83Right-handed alpha
Helix 5
5
A
113 118Right-handed 310
Helix 6
6
A
125 134Right-handed alpha
Helix 7
7
A
143 152Right-handed alpha
Helix 8
8
A
153 166Right-handed alpha
Helix 9
9
A
170 174Right-handed 310
Helix 10
10
A
187 191Right-handed 310
Helix 11
11
A
198 201Right-handed 310
Helix 12
12
A
202 217Right-handed alpha
Helix 13
13
A
226 235Right-handed alpha
Helix 14
14
A
242 250Right-handed 310
Helix 15
15
A
259 265Right-handed alpha
Helix 16
16
A
265 286Right-handed alpha
Helix 17
17
A
286 299Right-handed alpha
Helix 18
18
A
301 310Right-handed alpha
Helix 19
19
A
312 316Right-handed 310
Helix 20
20
A
322 339Right-handed alpha
Helix 21
21
A
347 352Right-handed alpha
Helix 22
22
A
354 363Right-handed alpha
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There are 2 sheets in PDB entry 2DE2. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
20 25parallel
Strand 3
A
68 72parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
89 97anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
121 124parallel
Strand 3
A
221 225parallel
Strand 4
A
101 105anti-parallel
Strand 5
A
238 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il