Analysis of interatomic Contacts of Structural Units in PDB entry:
2DEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DEG entry

There are 6 chains in PDB entry 2DEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2THR 69
B
 GLY 2THR 69
C
 GLY 2GLU 68
D
 GLY 2GLU 68
E
 GLY 2GLU 68
F
 GLY 2GLU 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2DEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
B
17 30Right-handed alpha
Helix 3
3
C
17 33Right-handed alpha
Helix 4
4
D
17 33Right-handed alpha
Helix 5
5
E
17 33Right-handed alpha
Helix 6
6
F
17 33Right-handed alpha
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There are 3 sheets in PDB entry 2DEG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 48first strand
Strand 2
A
53 65anti-parallel
Strand 3
A
5 14anti-parallel
Strand 4
F
4 14anti-parallel
Strand 5
F
52 65anti-parallel
Strand 6
F
36 49anti-parallel
Strand 7
E
36 49anti-parallel
Strand 8
E
52 65anti-parallel
Strand 9
E
5 14anti-parallel
Strand 10
B
4 14anti-parallel
Strand 11
B
52 65anti-parallel
Strand 12
B
36 49anti-parallel
Strand 13
C
36 48anti-parallel
Strand 14
A
36 48anti-parallel
Strand 15
B
36 49anti-parallel
Strand 16
C
36 48anti-parallel
Strand 17
C
53 65anti-parallel
Strand 18
C
5 14anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 48first strand
Strand 2
A
53 65anti-parallel
Strand 3
A
5 14anti-parallel
Strand 4
F
4 14anti-parallel
Strand 5
F
52 65anti-parallel
Strand 6
D
36 49first strand
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There are 15 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 14first strand
Strand 2
D
52 65anti-parallel
Strand 3
D
36 49anti-parallel
Strand 4
E
36 49anti-parallel
Strand 5
E
52 65anti-parallel
Strand 6
E
5 14anti-parallel
Strand 7
B
4 14anti-parallel
Strand 8
B
52 65anti-parallel
Strand 9
B
36 49anti-parallel
Strand 10
C
36 48anti-parallel
Strand 11
A
36 48anti-parallel
Strand 12
B
36 49anti-parallel
Strand 13
C
36 48anti-parallel
Strand 14
C
53 65anti-parallel
Strand 15
C
5 14anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il