Analysis of interatomic Contacts of Structural Units in PDB entry:
2DEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DEJ entry

There is 1 chain in PDB entry 2DEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2DEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
67 81Right-handed alpha
Helix 3
3
A
103 120Right-handed alpha
Helix 4
4
A
125 140Right-handed alpha
Helix 5
5
A
147 156Right-handed alpha
Helix 6
6
A
195 213Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
221 228Right-handed 310
Helix 9
9
A
229 255Right-handed alpha
Helix 10
10
A
257 275Right-handed alpha
Helix 11
11
A
280 293Right-handed alpha
Helix 12
12
A
317 333Right-handed alpha
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There are 3 sheets in PDB entry 2DEJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 13first strand
Strand 2
A
23 40anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
171 175anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
87 93parallel
Strand 4
A
23 40anti-parallel
Strand 5
A
344 345anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
308 314anti-parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
338 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il