Analysis of interatomic Contacts of Structural Units in PDB entry:
2DEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DEP entry

There are 2 chains in PDB entry 2DEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 43PRO 382
B
 ILE 44PRO 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2DEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 51Right-handed alpha
Helix 2
2
A
62 66Right-handed 310
Helix 3
3
A
67 78Right-handed alpha
Helix 4
4
A
88 93Right-handed alpha
Helix 5
5
A
101 114Right-handed alpha
Helix 6
6
A
130 135Right-handed 310
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
147 174Right-handed alpha
Helix 9
9
A
191 195Right-handed 310
Helix 10
10
A
198 205Right-handed alpha
Helix 11
11
A
206 221Right-handed alpha
Helix 12
12
A
235 252Right-handed alpha
Helix 13
13
A
271 284Right-handed alpha
Helix 14
14
A
312 332Right-handed alpha
Helix 15
15
A
333 335Right-handed 310
Helix 16
16
A
350 354Right-handed 310
Helix 17
17
A
373 381Right-handed alpha
Helix 18
18
B
46 51Right-handed alpha
Helix 19
19
B
62 66Right-handed 310
Helix 20
20
B
67 78Right-handed alpha
Helix 21
21
B
88 93Right-handed alpha
Helix 22
22
B
101 114Right-handed alpha
Helix 23
23
B
130 135Right-handed 310
Helix 24
24
B
141 145Right-handed 310
Helix 25
25
B
147 174Right-handed alpha
Helix 26
26
B
191 195Right-handed 310
Helix 27
27
B
198 205Right-handed alpha
Helix 28
28
B
206 221Right-handed alpha
Helix 29
29
B
235 252Right-handed alpha
Helix 30
30
B
271 284Right-handed alpha
Helix 31
31
B
312 333Right-handed alpha
Helix 32
32
B
334 337Right-handed 310
Helix 33
33
B
350 354Right-handed 310
Helix 34
34
B
373 381Right-handed alpha
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There are 2 sheets in PDB entry 2DEP. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
288 297parallel
Strand 3
A
337 342parallel
Strand 4
A
57 61parallel
Strand 5
A
80 83parallel
Strand 6
A
117 125parallel
Strand 7
A
179 184parallel
Strand 8
A
225 230parallel
Strand 9
A
258 261parallel
Strand 10
A
288 297parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 266first strand
Strand 2
B
288 297parallel
Strand 3
B
339 342parallel
Strand 4
B
57 61parallel
Strand 5
B
80 83parallel
Strand 6
B
117 124parallel
Strand 7
B
179 184parallel
Strand 8
B
225 230parallel
Strand 9
B
258 261parallel
Strand 10
B
288 297parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il