Analysis of interatomic Contacts of Structural Units in PDB entry:
2DET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DET entry

There are 2 chains in PDB entry 2DET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 G 70
A
 THR 4VAL 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2DET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
45 66Right-handed alpha
Helix 3
3
A
74 82Right-handed alpha
Helix 4
4
A
82 92Right-handed alpha
Helix 5
5
A
98 106Right-handed alpha
Helix 6
6
A
109 117Right-handed alpha
Helix 7
7
A
146 150Right-handed 310
Helix 8
8
A
151 157Right-handed 310
Helix 9
9
A
160 165Right-handed alpha
Helix 10
10
A
169 173Right-handed 310
Helix 11
11
A
174 186Right-handed alpha
Helix 12
12
A
205 211Right-handed alpha
Helix 13
13
A
279 281Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2DET. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
7 11parallel
Strand 3
A
123 125parallel
Strand 4
A
166 167parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
138 142anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 263first strand
Strand 2
A
272 275anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 290first strand
Strand 2
A
329 338anti-parallel
Strand 3
A
317 322anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
345 350anti-parallel
Strand 6
A
353 365anti-parallel
Strand 7
A
283 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il