Analysis of interatomic Contacts of Structural Units in PDB entry:
2DEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DEU entry

There are 4 chains in PDB entry 2DEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 C 74
D
 G 1 C 74
A
 ALA 5VAL 368
B
 ALA 5VAL 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2DEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
45 66Right-handed alpha
Helix 3
3
A
74 82Right-handed alpha
Helix 4
4
A
82 92Right-handed alpha
Helix 5
5
A
97 103Right-handed alpha
Helix 6
6
A
109 117Right-handed alpha
Helix 7
7
A
151 156Right-handed 310
Helix 8
8
A
159 165Right-handed alpha
Helix 9
9
A
169 173Right-handed 310
Helix 10
10
A
174 186Right-handed alpha
Helix 11
11
A
205 211Right-handed alpha
Helix 12
12
A
279 281Right-handed 310
Helix 13
13
B
15 29Right-handed alpha
Helix 14
14
B
45 66Right-handed alpha
Helix 15
15
B
74 82Right-handed alpha
Helix 16
16
B
82 92Right-handed alpha
Helix 17
17
B
97 103Right-handed alpha
Helix 18
18
B
109 117Right-handed alpha
Helix 19
19
B
151 156Right-handed 310
Helix 20
20
B
159 165Right-handed alpha
Helix 21
21
B
169 173Right-handed 310
Helix 22
22
B
174 186Right-handed alpha
Helix 23
23
B
205 211Right-handed alpha
Helix 24
24
B
279 281Right-handed 310
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There are 11 sheets in PDB entry 2DEU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
31 37parallel
Strand 3
A
7 11parallel
Strand 4
A
124 125parallel
Strand 5
A
166 167parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
138 143anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
228 231anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 265first strand
Strand 2
A
270 273anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
348 349anti-parallel
Strand 3
A
303 308anti-parallel
Strand 4
A
317 323anti-parallel
Strand 5
A
329 338anti-parallel
Strand 6
A
283 289anti-parallel
Strand 7
A
360 365anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
31 37parallel
Strand 3
B
7 11parallel
Strand 4
B
124 125parallel
Strand 5
B
166 167parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 135first strand
Strand 2
B
138 143anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
228 231anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 265first strand
Strand 2
B
270 273anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
283 289anti-parallel
Strand 3
B
329 331anti-parallel
Strand 4
B
317 323anti-parallel
Strand 5
B
303 308anti-parallel
Strand 6
B
348 349anti-parallel
Strand 7
B
354 356anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
283 289anti-parallel
Strand 3
B
360 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il