Analysis of interatomic Contacts of Structural Units in PDB entry:
2DFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DFP entry

There are 2 chains in PDB entry 2DFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLU 199
A
 ALA 201THR 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2DFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 43Right-handed 310
Helix 2
2
A
79 82Right-handed alpha
Helix 3
3
A
128 130Right-handed 310
Helix 4
4
A
133 139Right-handed alpha
Helix 5
5
A
151 155Right-handed alpha
Helix 6
6
A
168 183Right-handed alpha
Helix 7
7
A
184 187Right-handed 310
Helix 8
8
A
202 211Right-handed alpha
Helix 9
9
A
213 216Right-handed alpha
Helix 10
10
A
238 251Right-handed alpha
Helix 11
11
A
259 268Right-handed alpha
Helix 12
12
A
271 277Right-handed alpha
Helix 13
13
A
278 280Right-handed 310
Helix 14
14
A
305 311Right-handed alpha
Helix 15
15
A
329 335Right-handed alpha
Helix 16
16
A
349 359Right-handed alpha
Helix 17
17
A
365 375Right-handed alpha
Helix 18
18
A
384 399Right-handed alpha
Helix 19
19
A
401 414Right-handed alpha
Helix 20
20
A
434 436Right-handed 310
Helix 21
21
A
444 447Right-handed alpha
Helix 22
22
A
450 452Right-handed 310
Helix 23
23
A
454 456Right-handed 310
Helix 24
24
A
460 479Right-handed alpha
Helix 25
25
A
518 525Right-handed alpha
Helix 26
26
A
527 534Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2DFP. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
57 60parallel
Back to list of sheets
Back to top of page

There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
26 34anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
142 147anti-parallel
Strand 5
A
110 116parallel
Strand 6
A
193 199parallel
Strand 7
A
221 226parallel
Strand 8
A
318 324parallel
Strand 9
A
417 423parallel
Strand 10
A
502 505parallel
Strand 11
A
510 514anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il