Analysis of interatomic Contacts of Structural Units in PDB entry:
2DG2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DG2 entry

There are 6 chains in PDB entry 2DG2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26GLN 258
B
 ALA 26GLN 258
C
 ALA 26GLN 258
D
 ALA 26GLN 258
E
 ALA 26GLN 258
F
 ALA 26GLN 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 2DG2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 45Right-handed alpha
Helix 2
2
A
49 69Right-handed alpha
Helix 3
3
A
70 74Right-handed 310
Helix 4
4
A
88 104Right-handed alpha
Helix 5
5
A
118 131Right-handed alpha
Helix 6
6
A
142 150Right-handed alpha
Helix 7
7
A
169 178Right-handed alpha
Helix 8
8
A
215 221Right-handed 310
Helix 9
9
A
234 241Right-handed alpha
Helix 10
10
B
31 45Right-handed alpha
Helix 11
11
B
49 69Right-handed alpha
Helix 12
12
B
70 74Right-handed 310
Helix 13
13
B
88 104Right-handed alpha
Helix 14
14
B
118 131Right-handed alpha
Helix 15
15
B
142 150Right-handed alpha
Helix 16
16
B
169 178Right-handed alpha
Helix 17
17
B
215 220Right-handed 310
Helix 18
18
B
234 241Right-handed alpha
Helix 19
19
C
31 45Right-handed alpha
Helix 20
20
C
49 69Right-handed alpha
Helix 21
21
C
70 74Right-handed 310
Helix 22
22
C
88 104Right-handed alpha
Helix 23
23
C
118 131Right-handed alpha
Helix 24
24
C
142 150Right-handed alpha
Helix 25
25
C
169 178Right-handed alpha
Helix 26
26
C
215 220Right-handed 310
Helix 27
27
C
234 241Right-handed alpha
Helix 28
28
D
31 45Right-handed alpha
Helix 29
29
D
49 69Right-handed alpha
Helix 30
30
D
70 74Right-handed 310
Helix 31
31
D
88 104Right-handed alpha
Helix 32
32
D
118 131Right-handed alpha
Helix 33
33
D
142 150Right-handed alpha
Helix 34
34
D
169 178Right-handed alpha
Helix 35
35
D
215 220Right-handed 310
Helix 36
36
D
234 241Right-handed alpha
Helix 37
37
E
31 45Right-handed alpha
Helix 38
38
E
49 69Right-handed alpha
Helix 39
39
E
70 74Right-handed 310
Helix 40
40
E
88 104Right-handed alpha
Helix 41
41
E
118 131Right-handed alpha
Helix 42
42
E
142 150Right-handed alpha
Helix 43
43
E
169 178Right-handed alpha
Helix 44
44
E
215 221Right-handed 310
Helix 45
45
E
234 241Right-handed alpha
Helix 46
46
F
31 45Right-handed alpha
Helix 47
47
F
49 69Right-handed alpha
Helix 48
48
F
70 74Right-handed 310
Helix 49
49
F
88 104Right-handed alpha
Helix 50
50
F
118 131Right-handed alpha
Helix 51
51
F
142 150Right-handed alpha
Helix 52
52
F
169 178Right-handed alpha
Helix 53
53
F
215 220Right-handed 310
Helix 54
54
F
234 241Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2DG2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
80 85parallel
Strand 3
A
152 156parallel
Strand 4
A
184 187parallel
Strand 5
A
207 211parallel
Strand 6
A
225 229parallel
Strand 7
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
80 85parallel
Strand 3
B
152 156parallel
Strand 4
B
184 187parallel
Strand 5
B
207 211parallel
Strand 6
B
225 229parallel
Strand 7
B
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
80 85parallel
Strand 3
C
152 156parallel
Strand 4
C
184 187parallel
Strand 5
C
207 211parallel
Strand 6
C
225 229parallel
Strand 7
C
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
80 85parallel
Strand 3
D
152 156parallel
Strand 4
D
184 187parallel
Strand 5
D
207 211parallel
Strand 6
D
225 229parallel
Strand 7
D
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 111first strand
Strand 2
E
80 85parallel
Strand 3
E
152 156parallel
Strand 4
E
184 187parallel
Strand 5
E
207 211parallel
Strand 6
E
225 229parallel
Strand 7
E
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
107 111first strand
Strand 2
F
80 85parallel
Strand 3
F
152 156parallel
Strand 4
F
184 187parallel
Strand 5
F
207 211parallel
Strand 6
F
225 229parallel
Strand 7
F
255 256anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il