Analysis of interatomic Contacts of Structural Units in PDB entry:
2DGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DGA entry

There is 1 chain in PDB entry 2DGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12PRO 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2DGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
40 45Right-handed alpha
Helix 4
4
A
56 65Right-handed alpha
Helix 5
5
A
66 69Right-handed 310
Helix 6
6
A
80 96Right-handed alpha
Helix 7
7
A
105 110Right-handed alpha
Helix 8
8
A
118 135Right-handed alpha
Helix 9
9
A
149 157Right-handed alpha
Helix 10
10
A
158 162Right-handed 310
Helix 11
11
A
163 180Right-handed alpha
Helix 12
12
A
191 201Right-handed alpha
Helix 13
13
A
225 249Right-handed alpha
Helix 14
14
A
272 287Right-handed alpha
Helix 15
15
A
287 297Right-handed alpha
Helix 16
16
A
300 308Right-handed alpha
Helix 17
17
A
309 311Right-handed 310
Helix 18
18
A
315 323Right-handed alpha
Helix 19
19
A
352 357Right-handed 310
Helix 20
20
A
383 397Right-handed alpha
Helix 21
21
A
425 445Right-handed alpha
Helix 22
22
A
462 467Right-handed 310
Helix 23
23
A
487 497Right-handed alpha
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There are 3 sheets in PDB entry 2DGA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
328 341anti-parallel
Strand 3
A
403 407parallel
Strand 4
A
449 455parallel
Strand 5
A
34 38parallel
Strand 6
A
99 103parallel
Strand 7
A
138 144parallel
Strand 8
A
185 190parallel
Strand 9
A
256 268parallel
Strand 10
A
328 341parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
469 470anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
484 486anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il