Analysis of interatomic Contacts of Structural Units in PDB entry:
2DGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2DGD entry

There are 4 chains in PDB entry 2DGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PHE 223
B
 PRO 2PHE 223
C
 PRO 2PHE 223
D
 PRO 2PHE 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2DGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
48 64Right-handed alpha
Helix 3
3
A
81 89Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
118 131Right-handed alpha
Helix 6
6
A
146 152Right-handed alpha
Helix 7
7
A
154 164Right-handed alpha
Helix 8
8
A
165 170Right-handed alpha
Helix 9
9
A
186 196Right-handed alpha
Helix 10
10
A
202 215Right-handed alpha
Helix 11
11
B
18 27Right-handed alpha
Helix 12
12
B
48 64Right-handed alpha
Helix 13
13
B
81 89Right-handed alpha
Helix 14
14
B
94 106Right-handed alpha
Helix 15
15
B
118 131Right-handed alpha
Helix 16
16
B
146 152Right-handed alpha
Helix 17
17
B
154 164Right-handed alpha
Helix 18
18
B
165 170Right-handed alpha
Helix 19
19
B
186 196Right-handed alpha
Helix 20
20
B
202 215Right-handed alpha
Helix 21
21
C
18 27Right-handed alpha
Helix 22
22
C
48 64Right-handed alpha
Helix 23
23
C
81 89Right-handed alpha
Helix 24
24
C
94 106Right-handed alpha
Helix 25
25
C
118 131Right-handed alpha
Helix 26
26
C
146 152Right-handed alpha
Helix 27
27
C
154 164Right-handed alpha
Helix 28
28
C
165 170Right-handed alpha
Helix 29
29
C
186 196Right-handed alpha
Helix 30
30
C
202 215Right-handed alpha
Helix 31
31
D
18 27Right-handed alpha
Helix 32
32
D
48 64Right-handed alpha
Helix 33
33
D
81 89Right-handed alpha
Helix 34
34
D
94 106Right-handed alpha
Helix 35
35
D
118 131Right-handed alpha
Helix 36
36
D
146 152Right-handed alpha
Helix 37
37
D
154 164Right-handed alpha
Helix 38
38
D
165 170Right-handed alpha
Helix 39
39
D
186 196Right-handed alpha
Helix 40
40
D
202 215Right-handed alpha
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There are 8 sheets in PDB entry 2DGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 38first strand
Strand 2
A
6 13parallel
Strand 3
A
69 72parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 141first strand
Strand 2
A
110 115parallel
Strand 3
A
174 177parallel
Strand 4
A
199 201parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 38first strand
Strand 2
B
6 13parallel
Strand 3
B
69 72parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 141first strand
Strand 2
B
110 115parallel
Strand 3
B
174 177parallel
Strand 4
B
199 201parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 38first strand
Strand 2
C
6 13parallel
Strand 3
C
69 72parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 141first strand
Strand 2
C
110 115parallel
Strand 3
C
174 177parallel
Strand 4
C
199 201parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 38first strand
Strand 2
D
6 13parallel
Strand 3
D
69 72parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 141first strand
Strand 2
D
110 115parallel
Strand 3
D
174 177parallel
Strand 4
D
199 201parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il